View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8259_high_14 (Length: 221)
Name: NF8259_high_14
Description: NF8259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8259_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 34139810 - 34139999
Alignment:
| Q |
17 |
aatactaattaaagttaagcaatccataaaagtgattaaaacaaacacagtataaaattatgtcaaaagtacctgaataataccgtcaatgttgataatg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34139810 |
aatactaattaaagttaagcaatccataaaagtgactaaaacaaacacagtataaaattatgtcaaaagtacctgaataataccgccaatgttgataata |
34139909 |
T |
|
| Q |
117 |
tacggatctcgggtaggttttacaaaaacccattgttgatctgatttacgcttcacttcaagaccttcaacctcatttagggtaagaata |
206 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34139910 |
tacggatctcgggtaggttttacaagaacccgttgttgatctgttttacgcttcacttcaagaccttcaacctcatttagggtaagaata |
34139999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 82 - 206
Target Start/End: Original strand, 34131026 - 34131150
Alignment:
| Q |
82 |
aaagtacctgaataataccgtcaatgttgataatgtacggatctcgggtaggttttacaaaaacccattgttgatctgatttacgcttcacttcaagacc |
181 |
Q |
| |
|
||||||||||||| ||| | ||| ||||||||||| | |||| |||||||||| |||| |||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
34131026 |
aaagtacctgaatgatatcaccaacattgataatgtaagcatctggggtaggtttcacaagaacccattgttggtctgatttacgcttcacttcaagtcc |
34131125 |
T |
|
| Q |
182 |
ttcaacctcatttagggtaagaata |
206 |
Q |
| |
|
| ||||||||| | ||| ||||||| |
|
|
| T |
34131126 |
tccaacctcatcttgggcaagaata |
34131150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 34142571 - 34142645
Alignment:
| Q |
132 |
ggttttacaaaaacccattgttgatctgatttacgcttcacttcaagaccttcaacctcatttagggtaagaata |
206 |
Q |
| |
|
||||| |||| |||||| |||||||||| ||| |||||||||||||| ||| ||||||||| | ||| ||||||| |
|
|
| T |
34142571 |
ggtttcacaagaacccactgttgatctgttttccgcttcacttcaagtcctccaacctcatcttgggcaagaata |
34142645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University