View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8259_high_3 (Length: 487)
Name: NF8259_high_3
Description: NF8259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8259_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 38748544 - 38749014
Alignment:
| Q |
1 |
atattacagttgatagtgcagctcatcacgttgatccgtctgacaagaagaaatcgcgatgagacgcatatcatggctaaggttttctgccgcaaagcca |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
38748544 |
atattacagttgatagtgcagctcatcactttgatccgtctgacaagaagaaatcgcgatgagatgcatatcatggctaagattttctgccgcaaagcca |
38748643 |
T |
|
| Q |
101 |
attgcaacatcttgtttcagacggccattttattttattttattcatgctttgtttcctgacagaatattatgtcattgtgaaatcactctctcctgcag |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38748644 |
attgcaacatcttgtttcagacagccattttattttattttattcatgctttgtttcctgacagaatattatgtcattgtgaaaccactctctcctgcag |
38748743 |
T |
|
| Q |
201 |
tattctttctcatttctcattggcagtaaggttttgctagtaactcaattgttttatcataacttttacattatgttaatatagcttataaacagtcaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38748744 |
tattctttctcatttctcattggcagtaaggttttgctagtaactcaattgttttatcataacttttacattatgttaatatagcttataaacagtcaat |
38748843 |
T |
|
| Q |
301 |
actaagtacaagagtatgtcgtaaaatagtaacagtaaattataacaagcaaagcatatatcatttatcaccacaagaaatcaatcaaatcatatgccaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38748844 |
actaagtacaagagtatgtcgtaaaatagtaacagtaaattataacaagcaaagcatatatcatttatcaccacgagaaatcaatcaaatcatatgccaa |
38748943 |
T |
|
| Q |
401 |
gagttgaacatcattatccatagtaactcctatataaaactgtatcacgaaataagagtaaaacagctgag |
471 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38748944 |
gagttgaacatcattatccatagtaactcctatataaaactgtatcacgaaataagagtaaaacagctgag |
38749014 |
T |
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