View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8259_high_8 (Length: 296)
Name: NF8259_high_8
Description: NF8259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8259_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 34467901 - 34468172
Alignment:
| Q |
14 |
agattgaaatagatgttcttgaagatactctaaagaagattcagagtatgtttgagcacattataggcaagactgtctagtttcattttatcnnnnnnnn |
113 |
Q |
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| T |
34467901 |
agattgaaatagatattcttgaagatactctaaagaagattcagagtatgtttgagcacattataggcaagactgtctagtttcctattatctttttttt |
34468000 |
T |
|
| Q |
114 |
--ctttc--agttaagactttaataattgtgttgcagttctgtacgtgatgaacacaaacctttattatgataatatcgcagttaaaatttgataaaatt |
209 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34468001 |
ttctttctcagttaagactttaataattgtgttgcagttctgtgcgtgatgaacacaaacctttattatgataacatcgcagttaaaatttgataaaatt |
34468100 |
T |
|
| Q |
210 |
aatgttaccattcttctagttaaattcaagcgatgttaattgcattgccaataacatataggctgcattatt |
281 |
Q |
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||||||||| |||||||||||||| |||||||||||| ||||||||| |||||| ||||||||||||||||| |
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| T |
34468101 |
aatgttacctttcttctagttaaagtcaagcgatgtttattgcattgtcaataatatataggctgcattatt |
34468172 |
T |
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