View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8259_low_11 (Length: 245)
Name: NF8259_low_11
Description: NF8259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8259_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 25993986 - 25994205
Alignment:
| Q |
14 |
ttctccaacacacaaacaccttctccttcctcacatcccccacacccttcctccaactaacaacccacgacctctcatca--------caaca-aaatga |
104 |
Q |
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| T |
25993986 |
ttctccaacacacaaacaccttctccttcctcacatcccccacacccttcctccaactaacaactcacgatctctcctcaaaccaaaacaacacaaacga |
25994085 |
T |
|
| Q |
105 |
caccatttcactttctcctctccaacaaattctagaacttgaactcaacaacgacgacgagtggcgcgatgcaaagcgtgactcaaccgaaatgtttttc |
204 |
Q |
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| T |
25994086 |
ctccatttcactttctcctctccaacaaatcctagaacttgaactcaacaacgacagcgagtggcgcgacgcaaagcgtgactcaaccgaaatgtttttc |
25994185 |
T |
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| Q |
205 |
ggtagtgtttacgcactgcc |
224 |
Q |
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|| ||||||||||||||||| |
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| T |
25994186 |
ggcagtgtttacgcactgcc |
25994205 |
T |
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