View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8259_low_12 (Length: 242)
Name: NF8259_low_12
Description: NF8259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8259_low_12 |
 | |
|
| [»] chr1 (6 HSPs) |
| |
|
| [»] chr3 (11 HSPs) |
| |
|
| [»] scaffold0247 (1 HSPs) |
| |
|
| [»] chr4 (11 HSPs) |
| |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 25881391 - 25881158
Alignment:
| Q |
10 |
gacatcatcctta-ccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
108 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25881391 |
gacatcatccttatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaactttgttcttctttctttaaggcacgtgcttt |
25881292 |
T |
|
| Q |
109 |
tccaattccttcttaaatgcaaaggccttttgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagaga |
208 |
Q |
| |
|
| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25881291 |
ttcaatttctttttaaatgcaaaggccttttgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagaga |
25881192 |
T |
|
| Q |
209 |
atattttgcttcttgaatttgttccaaaaagtcc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
25881191 |
atattttgcttcttgaatttgttccaaaaagtcc |
25881158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 35755454 - 35755681
Alignment:
| Q |
10 |
gacatcatcctta-ccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
108 |
Q |
| |
|
||||||||||||| || ||||||| ||||||| |||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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|
| T |
35755454 |
gacatcatccttatccctttgtagttttaccataatgctctcaagaacattctttctttgtaaaactatttt--tcttctttctttaaggcacgtgcttt |
35755551 |
T |
|
| Q |
109 |
tccaattccttcttaaatgcaaaggccttttgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagaga |
208 |
Q |
| |
|
| |||| | |||||||||||| | || ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
35755552 |
ttcaatatttctttaaatgcaaagtctttatgtaatcatatgatattctttccatttatgtcatatat-caaagtatcttcttttggtgagacataggga |
35755650 |
T |
|
| Q |
209 |
atattttgcttcttgaatttgttccaaaaagt |
240 |
Q |
| |
|
|||||||| |||||| |||||| ||| ||||| |
|
|
| T |
35755651 |
atattttg-ttcttggatttgtaccacaaagt |
35755681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 93 - 240
Target Start/End: Complemental strand, 23550905 - 23550760
Alignment:
| Q |
93 |
ttaaggcacgtgcttttccaattccttcttaaatgcaaaggccttttgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttt |
192 |
Q |
| |
|
||||||||||||||||| |||| | ||||||||||| | || | ||||||||||||||| |||||||||||||||||||| |||| |||||||||| |
|
|
| T |
23550905 |
ttaaggcacgtgctttttcaatatttctttaaatgcaaaacctttatataatcatgtgatattttttccatttatgtcatatat-caaattatcttcttt |
23550807 |
T |
|
| Q |
193 |
tggtgagacatagagaatattttgcttcttgaatttgttccaaaaagt |
240 |
Q |
| |
|
||||||||||||| |||||||||| |||||| |||||| ||| ||||| |
|
|
| T |
23550806 |
tggtgagacatagggaatattttg-ttcttggatttgtaccacaaagt |
23550760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 35755328 - 35755398
Alignment:
| Q |
26 |
tttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaag |
97 |
Q |
| |
|
||||||| || |||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
35755328 |
tttgtagtttcaccaaaatgttctcaagaacattctttctttgtaaaac-atttttttcttctttctttaag |
35755398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 28313754 - 28313820
Alignment:
| Q |
176 |
tccaaagtatcttcttttggtgagacatagagaatattttgcttcttgaatttgttccaaaaagtcc |
242 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
28313754 |
tccaaagtatattcttttggtgagatagagagaatattttgcttcttgattttgtaccaaaaagtcc |
28313820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 23551054 - 23550985
Alignment:
| Q |
26 |
tttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaag |
97 |
Q |
| |
|
||||||| || |||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23551054 |
tttgtagtttcaccagaatattctcaagaacattttttctttgtaaaacaattt--ttcttctttctttaag |
23550985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 17530876 - 17531110
Alignment:
| Q |
10 |
gacatcatcctta-ccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
108 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17530876 |
gacatcatccttatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
17530975 |
T |
|
| Q |
109 |
tccaattccttcttaaatgcaaaggccttt-tgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagag |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17530976 |
tccaattcctttttaaatgcaaaggcctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagag |
17531075 |
T |
|
| Q |
208 |
aatattttgcttcttgaatttgttccaaaaagtcc |
242 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17531076 |
aatattttgtttcttgaatttgttccaaaaagtcc |
17531110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 17535815 - 17536049
Alignment:
| Q |
10 |
gacatcatcctta-ccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
108 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17535815 |
gacatcatccttatccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
17535914 |
T |
|
| Q |
109 |
tccaattccttcttaaatgcaaaggccttt-tgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagag |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17535915 |
tccaattcctttttaaatgcaaaggcctttatgtaatcatatgatattctttccatttatgtcatatatccaaagtattttcttttggtgagacatagag |
17536014 |
T |
|
| Q |
208 |
aatattttgcttcttgaatttgttccaaaaagtcc |
242 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17536015 |
aatattttgtttcttgaatttgttccaaaaagtcc |
17536049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 54623698 - 54623465
Alignment:
| Q |
10 |
gacatcatcctta-ccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
108 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
54623698 |
gacatcatccttatccatttgtagctataccagaatgttctcaagaacattctttctttgtaaaacgattttgttcttctttctttaaggcacgtgcttt |
54623599 |
T |
|
| Q |
109 |
tccaattccttcttaaatgcaaaggccttttgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagaga |
208 |
Q |
| |
|
||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54623598 |
tccaattcctttttaaatgcaaatgtcttttgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagaga |
54623499 |
T |
|
| Q |
209 |
atattttgcttcttgaatttgttccaaaaagtcc |
242 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
54623498 |
atattttgcttcttgaatttcttccaaaaagtcc |
54623465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 10 - 235
Target Start/End: Complemental strand, 32877199 - 32876972
Alignment:
| Q |
10 |
gacatcatccttacc-atttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
108 |
Q |
| |
|
||||||||||||| | |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
32877199 |
gacatcatccttatctatttgtagctttaccaaaatgttctcaagaacattttttctttgtaaaacaattttgtttttctttctttaaggcacatgcttt |
32877100 |
T |
|
| Q |
109 |
tccaattccttcttaaatgcaaaggccttt-tgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagag |
207 |
Q |
| |
|
| ||||||||| |||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||| ||| ||||||||||||||||||||| |
|
|
| T |
32877099 |
ttcaattcctttttaaatgcaaaggcctttatgtaatcatatgatattcttttcatttatgtcataagtccaaaatatattcttttggtgagacatagag |
32877000 |
T |
|
| Q |
208 |
aatattttgcttcttgaatttgttccaa |
235 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
32876999 |
aatattttgcttcttgaatttgttccaa |
32876972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 37919660 - 37919433
Alignment:
| Q |
10 |
gacatcatcctta-ccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
108 |
Q |
| |
|
||||||||| ||| || ||||||| |||||| |||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
37919660 |
gacatcatctttatccctttgtagttttaccggaatgttcgcaagaacattctttctttgtaaaactattt--ttcttctttctttaaggcacgtgcttt |
37919563 |
T |
|
| Q |
109 |
tccaattccttcttaaatgcaaaggccttttgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagaga |
208 |
Q |
| |
|
| |||| | |||||||||||| | || ||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
37919562 |
ttcaatatttctttaaatgcaaagcctttatgtaatcatgtgatattatttccatttatgccatatat-caaagtatcttcttttggtgagacattgaga |
37919464 |
T |
|
| Q |
209 |
atattttgcttcttgaatttgttccaaaaagt |
240 |
Q |
| |
|
|||||||| |||||| |||||| ||| ||||| |
|
|
| T |
37919463 |
atattttg-ttcttggatttgtaccacaaagt |
37919433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 46279732 - 46279962
Alignment:
| Q |
10 |
gacatcatcctta-ccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
108 |
Q |
| |
|
||||||||||||| || ||||||| || |||| |||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||| |||||| |
|
|
| T |
46279732 |
gacatcatccttatccctttgtagtttcaccataatgttctcaagaacattctttgtttgtaaaattatttt--tcttctttctttaaggcacatgcttt |
46279829 |
T |
|
| Q |
109 |
tccaattccttcttaaatgcaaaggccttttgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagaga |
208 |
Q |
| |
|
| |||| | ||| |||||||| | || |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||| |
|
|
| T |
46279830 |
ttcaatatttctttatatgcaaagcctttatgtaatcatgtgatattctttccatttatgtcatatat-caaagtatattcttttggggagacatagaga |
46279928 |
T |
|
| Q |
209 |
atattttg--cttcttgaatttgttccaaaaagt |
240 |
Q |
| |
|
|||||||| ||| |||||||||| ||| ||||| |
|
|
| T |
46279929 |
atattttgttctttttgaatttgtaccacaaagt |
46279962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 36433473 - 36433699
Alignment:
| Q |
10 |
gacatcatcctta-ccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
108 |
Q |
| |
|
||||||||||||| || ||||||| |||| ||||||||| ||||||||| | |||||||||||| ||||| ||||||||||||||||||| |||||| |
|
|
| T |
36433473 |
gacatcatccttatccctttgtagttttattggaatgttcttaagaacattttatctttgtaaaactatttt--tcttctttctttaaggcacttgcttt |
36433570 |
T |
|
| Q |
109 |
tccaattccttcttaaatgcaaaggccttttgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagaga |
208 |
Q |
| |
|
| |||| | |||||||||||| | || ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
36433571 |
ttcaatatttctttaaatgcaaagcctttatgtaatcatgtgatattttttccatttatgtcatata--caaagtatcttcttttggtgagacataggga |
36433668 |
T |
|
| Q |
209 |
atattttgcttcttgaatttgttccaaaaagt |
240 |
Q |
| |
|
|||||||| |||||| |||||| ||||||||| |
|
|
| T |
36433669 |
atattttg-ttcttggatttgtaccaaaaagt |
36433699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 36433348 - 36433416
Alignment:
| Q |
26 |
tttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaa |
96 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36433348 |
tttgtagtttcaccagaatgttctcaagaacattctttctttgtaaaacaattt--ttcttctttctttaa |
36433416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 37919982 - 37919900
Alignment:
| Q |
157 |
tttccatttatgtcatatatccaaagtatcttcttttggtgagacatagagaatattttgcttcttgaatttgttccaaaaagt |
240 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||| ||||||||||||| ||| ||||| |
|
|
| T |
37919982 |
tttccatttatgtcatatatc-aaagtatcttcttttggtgatacatagggaatatttttgttcttgaatttgtaccacaaagt |
37919900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 46279606 - 46279676
Alignment:
| Q |
26 |
tttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaag |
97 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
46279606 |
tttgtagtttcaccagaatgttctcaagaacattttttctttgtagaacaatttt-ttcttctttctttaag |
46279676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 37920094 - 37920013
Alignment:
| Q |
26 |
tttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgctttt |
109 |
Q |
| |
|
||||||| || ||| |||||||||||| |||||| |||||||||||||| |||| |||||||||||| |||||||||| |||| |
|
|
| T |
37920094 |
tttgtagtttcaccggaatgttctcaaaaacattttttctttgtaaaactattt--ttcttctttcttaaaggcacgtgttttt |
37920013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0247 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0247
Description:
Target: scaffold0247; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 23985 - 23752
Alignment:
| Q |
10 |
gacatcatccttac-catttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
108 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23985 |
gacatcatccttattcatttgtagctttaccgtaatgttctcaagaacattctttctttgtaaaacaattttgttattctttctttaaggcacgtgcttt |
23886 |
T |
|
| Q |
109 |
tccaattccttcttaaatgcaaaggccttttgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagaga |
208 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23885 |
ttcaattcctttttaaatgcaaaggccttttgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagaga |
23786 |
T |
|
| Q |
209 |
atattttgcttcttgaatttgttccaaaaagtcc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
23785 |
atattttgcttcttgaatttgttccaaaaagtcc |
23752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 23622244 - 23622011
Alignment:
| Q |
10 |
gacatcatcctta-ccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
108 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23622244 |
gacatcatccttatccatttggagctttaccagaatgttctcaagaacattctttctttgtaaaacgattttgttcttctttctttaaggcacgtgcttt |
23622145 |
T |
|
| Q |
109 |
tccaattccttcttaaatgcaaaggccttttgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagaga |
208 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23622144 |
tccaattcctttttaattgcaaaggccttttgtaatcataagatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatataga |
23622045 |
T |
|
| Q |
209 |
atattttgcttcttgaatttgttccaaaaagtcc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
23622044 |
atattttgcttcttgaatttgttccaaaaagtcc |
23622011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 16490664 - 16490894
Alignment:
| Q |
11 |
acatcatcctta-ccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgctttt |
109 |
Q |
| |
|
|||||||||||| ||||||||| || |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16490664 |
acatcatccttatccatttgtaatttcaccataatgttctcaagaacattctttctttgtaaaacaatttgtttcttctttctttaaggcacgtgctttt |
16490763 |
T |
|
| Q |
110 |
ccaattccttcttaaatgcaaaggccttt-tgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagaga |
208 |
Q |
| |
|
|||||||||| ||||||||||||| |||| || |||||| |||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
16490764 |
ccaattcctttttaaatgcaaaggtctttatgaaatcataagatattctttccatttgtgtcataagtccaaagtatattcttttggtgagacatagaga |
16490863 |
T |
|
| Q |
209 |
atattttgcttcttgaatttgttccaaaaag |
239 |
Q |
| |
|
| |||||||||||||||||||||||||||| |
|
|
| T |
16490864 |
tttttttgcttcttgaatttgttccaaaaag |
16490894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 10 - 174
Target Start/End: Original strand, 23442651 - 23442817
Alignment:
| Q |
10 |
gacatcatcctta-ccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
108 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23442651 |
gacatcatccttatccatttgtagctttaccataatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
23442750 |
T |
|
| Q |
109 |
tccaattccttcttaaatgcaaaggccttt-tgtaatcatgtgatattctttccatttatgtcatat |
174 |
Q |
| |
|
||||||||||| |||||||||||||| ||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23442751 |
tccaattcctttttaaatgcaaaggcatttatgtaatcataagatattctttccatttatgtcatat |
23442817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 25538125 - 25538352
Alignment:
| Q |
10 |
gacatcatccttac-catttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
108 |
Q |
| |
|
||||||||||||| | ||||||| |||||| |||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||| |
|
|
| T |
25538125 |
gacatcatccttattcctttgtagttttaccggaatgttcccaagaacattctttctttgtaaaactatttt--tcttctttctttaaggcacatgcttt |
25538222 |
T |
|
| Q |
109 |
tccaattccttcttaaatgcaaaggccttttgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagaga |
208 |
Q |
| |
|
| |||| | |||||||||||| | || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25538223 |
ttcaatatttctttaaatgcaaagtctttatgtaatcatgtgatattctttccatttatgtcatatat-caaagtatcttcttttggtgagacatagaga |
25538321 |
T |
|
| Q |
209 |
atattttgcttcttgaatttgttccaaaaagt |
240 |
Q |
| |
|
|||||||| |||||| |||||| ||| ||||| |
|
|
| T |
25538322 |
atattttg-ttcttggatttgtaccacaaagt |
25538352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 25515543 - 25515316
Alignment:
| Q |
10 |
gacatcatccttac-catttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
108 |
Q |
| |
|
||||||||||||| | ||||||| |||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
25515543 |
gacatcatccttattcctttgtagttttaccggaatgttctcaagaacattctttctttgtaaaactatttt--tcttctttctttaaggcacgtgcttt |
25515446 |
T |
|
| Q |
109 |
tccaattccttcttaaatgcaaaggccttttgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagaga |
208 |
Q |
| |
|
| |||| | |||||| || || | || ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
25515445 |
ttcaatatttctttaaattcacagcctttatgtaatcatgtgatattcttttcatttatgtcatatatc-aaagtatcttcttttggtgagacataggga |
25515347 |
T |
|
| Q |
209 |
atattttgcttcttgaatttgttccaaaaagt |
240 |
Q |
| |
|
|||||||| |||||| |||||| ||| ||||| |
|
|
| T |
25515346 |
atattttg-ttcttggatttgtaccacaaagt |
25515316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 28070280 - 28070065
Alignment:
| Q |
10 |
gacatcatcctta-ccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
108 |
Q |
| |
|
|||||||| |||| || ||||||| ||||| ||||||||||||| |||||| || |||| |||||| ||||| || ||||| ||||||||||||||||| |
|
|
| T |
28070280 |
gacatcattcttatccctttgtagttttac-agaatgttctcaa-aacatttttcctttctaaaactatttt--tcatctttatttaaggcacgtgcttt |
28070185 |
T |
|
| Q |
109 |
tccaattccttctt-aaatgcaaaggccttttgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagag |
207 |
Q |
| |
|
| |||| ||||| |||||||||| | || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| | |
|
|
| T |
28070184 |
ttcaatat-ttcttgaaatgcaaagcctttatgtaattatgtgatattctttccatttatgtcatatat-caaagtatcttcttttggcgaggcataggg |
28070087 |
T |
|
| Q |
208 |
aatattttgcttcttgaatttgt |
230 |
Q |
| |
|
||||||| | ||||||||||||| |
|
|
| T |
28070086 |
aatatttag-ttcttgaatttgt |
28070065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 50065715 - 50065784
Alignment:
| Q |
26 |
tttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaag |
97 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50065715 |
tttgtagtttcaccagaatgttctcaagaacattctttctttgtaaaacaattt--ttcttctttctttaag |
50065784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 23443632 - 23443696
Alignment:
| Q |
178 |
caaagtatcttcttttggtgagacatagagaatattttgcttcttgaatttgttccaaaaagtcc |
242 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
23443632 |
caaagtatcttcttctggtaagacatagagaatattttgcttcttgattttgtaccaaaaagtcc |
23443696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 28070395 - 28070336
Alignment:
| Q |
37 |
accagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaag |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||| |
|
|
| T |
28070395 |
accagaatgttctcaagaacattctttctttgcaaaacaattgt-ttcttctttctttaag |
28070336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 17239253 - 17239209
Alignment:
| Q |
198 |
agacatagagaatattttgcttcttgaatttgttccaaaaagtcc |
242 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
17239253 |
agacatagagaatattttgcttcttgattttgtaccaaaaagtcc |
17239209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 25538026 - 25538069
Alignment:
| Q |
52 |
agaacattctttctttgtaaaacaattttgttcttctttctttaag |
97 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25538026 |
agaacattttttctttgtaaaacaattt--ttcttctttctttaag |
25538069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 176836 - 176603
Alignment:
| Q |
10 |
gacatcatcctta-ccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
108 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
176836 |
gacatcatcctcaaccatttgtagctttaccagaatgttctaaagaacattctatctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
176737 |
T |
|
| Q |
109 |
tccaattccttcttaaatgcaaaggccttt-tgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagag |
207 |
Q |
| |
|
||||||| ||| |||||||||||| | ||| ||||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
176736 |
tccaatttctttttaaatgcaaagacatttatgtaatcatatgataatctttccatttatgtcataagtccaaagtatattcttttggtgagacatagag |
176637 |
T |
|
| Q |
208 |
aatattttgcttcttgaatttgttccaaaaagtcc |
242 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||| |
|
|
| T |
176636 |
aatattttgcttcttg-atttgtaccaaaaagtcc |
176603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 988526 - 988310
Alignment:
| Q |
10 |
gacatcatcctta-ccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
108 |
Q |
| |
|
||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
988526 |
gacatcatccttatccctttgtagttttaccagaatgttctcaagaacattctttctttgtaaaattatttt--tcttctttctttaaggcacgtgcttt |
988429 |
T |
|
| Q |
109 |
tccaattccttcttaaatgcaaaggccttttgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagaga |
208 |
Q |
| |
|
| |||| | |||||||||||| | || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| || |
|
|
| T |
988428 |
ttcaatatttctttaaatgcaaagtctttatgtaatcatgtgatattctttccatttatgtcatatat-caaagtatcttcttttgatgagacataggga |
988330 |
T |
|
| Q |
209 |
atattttgcttcttgaatttg |
229 |
Q |
| |
|
|||||||| |||||| ||||| |
|
|
| T |
988329 |
atattttg-ttcttggatttg |
988310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 7837307 - 7837084
Alignment:
| Q |
14 |
tcatcctta-ccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttttcca |
112 |
Q |
| |
|
||||||||| || ||||||| |||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||| |||| || |
|
|
| T |
7837307 |
tcatccttatccctttgtagttttaccagaatgttctcaagaacattttttctttgtaaaactattt--ttcttctttctttaaggcacgtgttttttca |
7837210 |
T |
|
| Q |
113 |
attccttcttaaatgcaaaggccttttgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagagaatat |
212 |
Q |
| |
|
|| | |||||||||||| | || ||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7837209 |
atatttctttaaatgcaaagtctttatgtaatcatgtgatattcttttcatttttgtcatatat-caaagtatcttcttttggtgagacatagagaatat |
7837111 |
T |
|
| Q |
213 |
tttgcttcttgaatttgttccaaaaagt |
240 |
Q |
| |
|
|||| ||||||||||||| ||| ||||| |
|
|
| T |
7837110 |
tttg-ttcttgaatttgtaccacaaagt |
7837084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 7807883 - 7807660
Alignment:
| Q |
14 |
tcatcctta-ccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttttcca |
112 |
Q |
| |
|
||||||||| || ||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| || |
|
|
| T |
7807883 |
tcatccttatccgtttgtagttttacgagaatgttctcaagaacattttttctttgtaaaactatttt--tcttctttctttaaggcacgtgctttttca |
7807786 |
T |
|
| Q |
113 |
attccttcttaaatgcaaaggccttttgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagagaatat |
212 |
Q |
| |
|
|| | |||||||||||| | || |||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7807785 |
atatttctttaaatgcaaagcctttatgtaataatgtgatattcttttcatttttgtcatatatc-aaagtatcttcttttggtgagacatagagaatat |
7807687 |
T |
|
| Q |
213 |
tttgcttcttgaatttgttccaaaaagt |
240 |
Q |
| |
|
|||| ||||||||||||| ||| ||||| |
|
|
| T |
7807686 |
tttg-ttcttgaatttgtaccacaaagt |
7807660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 988651 - 988582
Alignment:
| Q |
26 |
tttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaag |
97 |
Q |
| |
|
||||||| || |||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
988651 |
tttgtagtttcaccataatgttctcaagaacattctttctttgtaaaacaattt--ttcttctttccttaag |
988582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 7837438 - 7837367
Alignment:
| Q |
26 |
tttgtagctttaccagaatgttctcaagaacattctttctttgtaaaa-caattttgttcttctttctttaag |
97 |
Q |
| |
|
||||||| || ||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
7837438 |
tttgtagtttcaccagaatgttcttgagaacattctttctttgtaaaaacaatttt-ttcttctttctttaag |
7837367 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 2641735 - 2641536
Alignment:
| Q |
10 |
gacatcatcctta-ccatttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaaggcacgtgcttt |
108 |
Q |
| |
|
||||||||| ||| || ||||||| |||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||| |
|
|
| T |
2641735 |
gacatcatctttatccctttgtagttttaccggaatgttctcaagaacattctttctttgtaaaactatttt--tcttctttctttaaggcacatgcttt |
2641638 |
T |
|
| Q |
109 |
tccaattccttcttaaatgcaaaggccttttgtaatcatgtgatattctttccatttatgtcatatatccaaagtatcttcttttggtgagacatagaga |
208 |
Q |
| |
|
| |||| | |||||||||||| | || |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| || |
|
|
| T |
2641637 |
ttcaatatttctttaaatgcaaagcctttatgtaatcatgtgatattctttccatttatgtcatatat-caaagtatcttctttgggtgagacataggga |
2641539 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 2641859 - 2641791
Alignment:
| Q |
26 |
tttgtagctttaccagaatgttctcaagaacattctttctttgtaaaacaattttgttcttctttctttaag |
97 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| ||||||||| ||||||||| ||||||||| |||||| |
|
|
| T |
2641859 |
tttgtagtttcaccagaatgttctcaagaacattatttctttgt-aaacaattt--ttcttctttatttaag |
2641791 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 12391462 - 12391376
Alignment:
| Q |
10 |
gacatcatcctta-ccatttgtagctttaccagaatgttctcaagaacattc-tttctttgtaaaacaattttgttcttctttcttt |
94 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12391462 |
gacatcatccttatccatttgtagctttaccagaatgttctcaagaacattcttttctttgtaaaacaattttgttcttctttcttt |
12391376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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