View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8259_low_14 (Length: 226)
Name: NF8259_low_14
Description: NF8259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8259_low_14 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 38748551 - 38748324
Alignment:
| Q |
1 |
tgtaatatatgaatctttgttctgcttctccatggtgggtggtagtgaagctgttgggtacgaaccatagtttactgataaatggg--caggtcgctcga |
98 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
38748551 |
tgtaatataggaatctttgttctgcttctccatggtgattggtagtgaagctgttgggtacgaaccatagtttactgataaatgggggcaggtcgttcga |
38748452 |
T |
|
| Q |
99 |
gctggcgagtatataaacaaaattaattcttgtaaacctgagtttgaataatagaaaggcactgcagtctgcagcaactctgcagtcacagatgtaggca |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38748451 |
gctggcgagtatataaacaaaattaattcttgtaaacctgagtttgaataatagaaaggcactgcagtctgcagcaactctgcagtcacagatgtaggca |
38748352 |
T |
|
| Q |
199 |
aaattggttgaactccataatcaaatca |
226 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
38748351 |
aaattggttgaactccataatcaaatca |
38748324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 27318400 - 27318448
Alignment:
| Q |
51 |
ctgttgggtacgaaccatagtttactgataaatgggcaggtcgctcgag |
99 |
Q |
| |
|
|||||||||| || |||||||||||||||| |||| |||||||||||| |
|
|
| T |
27318400 |
ctgttgggtatgacacatagtttactgataagtgggtaggtcgctcgag |
27318448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 43304337 - 43304289
Alignment:
| Q |
176 |
ctctgcagtcacagatgtaggcaaaattggttgaactccataatcaaat |
224 |
Q |
| |
|
||||||||||| ||||||||||| |||| | ||||||||||||||||| |
|
|
| T |
43304337 |
ctctgcagtcagagatgtaggcacaattattcgaactccataatcaaat |
43304289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 1218624 - 1218583
Alignment:
| Q |
66 |
catagtttactgataaatgggcaggtcgctcgagctggcgag |
107 |
Q |
| |
|
||||||||||| |||| |||||||||| |||||||||||||| |
|
|
| T |
1218624 |
catagtttactaataagtgggcaggtcactcgagctggcgag |
1218583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 38270169 - 38270137
Alignment:
| Q |
66 |
catagtttactgataaatgggcaggtcgctcga |
98 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
38270169 |
catagtttactgataattgggcaggtcgctcga |
38270137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 43458338 - 43458286
Alignment:
| Q |
66 |
catagtttactgataaatgggcaggtcgctcgagc-tggcgagtatataaaca |
117 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||| ||||||||| |||||| |
|
|
| T |
43458338 |
catagtttactgataagtaggcaggtcgctcgagcagggcgagtatttaaaca |
43458286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University