View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8259_low_2 (Length: 577)
Name: NF8259_low_2
Description: NF8259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8259_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Original strand, 46005559 - 46006137
Alignment:
| Q |
1 |
tctgatatcaatgctctggcaaaaattaggagccagtcaaatccttgctctgatgctagagcagaaaacattatgaatttacattgattattatgtcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46005559 |
tctgatatcaatgctctggcaaaaattaggagccagtcaaatccttgctctgatgctagagcagaaaacattatgaatttacattgattattatgtcttc |
46005658 |
T |
|
| Q |
101 |
gtttgtttcnnnnnnnaccagtgggtcatggcacactatcatatataaaacgttgtgtattgttttcattatttttaaaaaagaaacaattggcttttac |
200 |
Q |
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| T |
46005659 |
gtttgtttctttttttaccagtgggtcatggcacactatcatatataaaacgttgtgtattgttttcattatttttaaaaaagaaacaattggcttttac |
46005758 |
T |
|
| Q |
201 |
atgttttaacaagtgatgctctcttaatttggggttaaatgggtctaaaatgaacgatgaattggatactttatattagtctgtccatcataaataacat |
300 |
Q |
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| T |
46005759 |
atgttttaacaagtgatgctctgttaatttggggttaaatgggtctaaaatgaacgatgaattggatactttgtattagtctgtccatcataagtaacat |
46005858 |
T |
|
| Q |
301 |
tactattcttttaaactttcattctattagaatcgatttaat--------------------gattgcctgatattacagcagggtgcggtgctataata |
380 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| |
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| T |
46005859 |
tactattcttttaaactttcattatattagaatcgatttaattatagtattttttggaacaggattccctgatattacagcagggtacggtgctataata |
46005958 |
T |
|
| Q |
381 |
aatgatagtcgtccgatcgcaattgtacggtcgagattgttttaactaaaaatacacaattttcaatcttaatccttcgatctcagatggacggctaaga |
480 |
Q |
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| T |
46005959 |
aatgatagtcctccgatcacaattgtacggtcgagattgttttaactaaaaatacacaatttttaatcttaatccttcgatctcagatggatggctaaga |
46006058 |
T |
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| Q |
481 |
ttgaatacttcgtgaaactgcatgcatttgctgcagcaaaacctggtccgtcttttttctttggtagattcactcatct |
559 |
Q |
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| T |
46006059 |
ttgaatacttcgtgaaactgcatgcatttgctgcagcaaaacctggtccgtcttttttccttggtagattcactcatct |
46006137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 383 - 494
Target Start/End: Complemental strand, 11591295 - 11591186
Alignment:
| Q |
383 |
tgatagtcgtccgatcgcaattgtacggtcgagattgttttaactaaaaatacacaattttcaatcttaatccttcgatctcagatggacggctaagatt |
482 |
Q |
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|||||| ||||||||| ||||| |||||| ||||||||||||||| ||| |||| ||||| ||||| || | |||||||||| | |||||||| ||||| |
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| T |
11591295 |
tgatagccgtccgatcacaattatacggttgagattgttttaact--aaagacacgatttttaatctcaaccgttcgatctcaaacggacggctgagatt |
11591198 |
T |
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| Q |
483 |
gaatacttcgtg |
494 |
Q |
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||| ||| |||| |
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| T |
11591197 |
gaaaactgcgtg |
11591186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 500
Target Start/End: Original strand, 40097176 - 40097263
Alignment:
| Q |
413 |
gagattgttttaactaaaaatacacaattttcaatcttaatccttcgatctcagatggacggctaagattgaatacttcgtgaaactg |
500 |
Q |
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| T |
40097176 |
gagattgttttaattaaaaagacacagttttgatttttaaccgtttgatctcagatgaacggccaagattgaaaactgcttgaaactg |
40097263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 469
Target Start/End: Complemental strand, 10250626 - 10250527
Alignment:
| Q |
370 |
gtgctataataaatgatagtcgtccgatcgcaattgtacggtcgagattgttttaactaaaaatacacaattttcaatcttaatccttcgatctcagatg |
469 |
Q |
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| T |
10250626 |
gtgctataatgaatgataaccgttaaatcacaattgttaggttgggattgttttaactaaaaagacacaattttcaatctcaaccattcgatcttagatg |
10250527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 481
Target Start/End: Original strand, 5743603 - 5743701
Alignment:
| Q |
383 |
tgatagtcgtccgatcgcaattgtacggtcgagattgttttaactaaaaatacacaattttcaatcttaatccttcgatctcagatggacggctaagat |
481 |
Q |
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| T |
5743603 |
tgatagtcgtccgatcacagttggatggtagaaatcgttttaattaaaaatacacagttttcaatctcaaccgttctatctaagatgaacggctgagat |
5743701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 469
Target Start/End: Complemental strand, 52208832 - 52208776
Alignment:
| Q |
413 |
gagattgttttaactaaaaatacacaattttcaatcttaatccttcgatctcagatg |
469 |
Q |
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| T |
52208832 |
gagattgttttaactaaaaacacaaagttttcaatctcaaccgttcgatctgagatg |
52208776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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