View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8259_low_5 (Length: 353)
Name: NF8259_low_5
Description: NF8259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8259_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 8135919 - 8135582
Alignment:
| Q |
1 |
tacttaactgcccatatcccatttttctccctgattttttacttcacaattgaaggttaactttatcattttatcatattttcgatgccaattttacata |
100 |
Q |
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||||||| || |||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
8135919 |
tacttaaatgtccatatcccagttttctccctgattttttacttcacagttgaaggttaactttgtcattttatcatattttcggtgccaattttacata |
8135820 |
T |
|
| Q |
101 |
actacccagcttttgttttttgttcctgctattttcttaacactattaaggatattatggtcatttgcactcattagttcacattatcaaaaacagcttt |
200 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||| |
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| T |
8135819 |
actacccagcttttgctttttgttcttgctattttcttaacactattaaggatattatggttatttgcactcattagttcatattatcaaaaacaacttt |
8135720 |
T |
|
| Q |
201 |
gtatttactttcagcaaaaacaaacgcaacaactttttactctatatccaaccatgttttctttatattgtcacttcattatgtccaacaattcaaattt |
300 |
Q |
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||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8135719 |
gtatttactttcatcaaaaacaaacacaagaactttttactctatatccaaccatgttttctttatattgtcacttcattctgtccaacaattcaaattt |
8135620 |
T |
|
| Q |
301 |
cgaatttcacatttcatcaactcctacattcactcttg |
338 |
Q |
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| T |
8135619 |
caaatttcacatttcatcaactcctacattcattcttg |
8135582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 8136583 - 8136289
Alignment:
| Q |
1 |
tacttaactgcccatatcccatttttctccctgattttttacttcacaattgaaggttaactttatcattttatcatattttcgatgccaattttacata |
100 |
Q |
| |
|
||||||| | |||||| |||| |||||||||| | ||||||| ||| ||||||||||||||| | ||||||||||||||||| ||||||||||||||| |
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| T |
8136583 |
tacttaagtacccataccccagttttctccctaactttttacgacacctttgaaggttaactttgttattttatcatattttcggtgccaattttacata |
8136484 |
T |
|
| Q |
101 |
actacccagcttttgttttttgttcctgctattttcttaacactattaaggatattatggtcatttgcactcattagttcacattatcaaaaacagcttt |
200 |
Q |
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|||||| ||||| |||||||||||| || | |||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||| |
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| T |
8136483 |
actaccgagcttgtgttttttgttcatgttgtttttttaacactattaaggatattatggtcatttgcactcattggtgcacattatcaaaaacaacttt |
8136384 |
T |
|
| Q |
201 |
gtatttactttcagcaaaaacaaacgcaacaactttttactctatatccaaccatgttttctttatattgtcacttcattatgtccaacaattcaa |
296 |
Q |
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||||||||||| || ||||||||| ||||| ||||| ||| |||||| ||||| |||||||||||||| ||||||| || ||||||||||||||| |
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| T |
8136383 |
atatttactttctgc-aaaacaaacacaacagcttttcactttatatcaaaccaagttttctttatattatcacttcgttctgtccaacaattcaa |
8136289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 25 - 296
Target Start/End: Complemental strand, 8136228 - 8135961
Alignment:
| Q |
25 |
ttctccctgattttttacttcacaattgaaggttaactttatcattttatcatattttcgatgccaattttacataactacccagcttttgttttttgtt |
124 |
Q |
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|||||| ||| |||||||||||||||| ||||||| |||| ||||||||||||||||||| | ||||||| ||||||||||||||||| | ||||| || |
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| T |
8136228 |
ttctccgtgactttttacttcacaatt-aaggttagctttgtcattttatcatattttcgttaccaattt-acataactacccagcttctagtttttttt |
8136131 |
T |
|
| Q |
125 |
cctgctattttcttaacactattaaggatattatggtcatttgcactcattagttcacattatcaaaaacagctttgtatttactttcagcaaaaacaaa |
224 |
Q |
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|||| | |||| |||||| |||||||||||||||| || ||||||||||||| ||||||| |||||||||| |||||||||||||||| || ||| | | |
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| T |
8136130 |
cctggtgtttttttaacattattaaggatattatgatcgtttgcactcattaattcacatgatcaaaaacaactttgtatttactttctgc--aaataga |
8136033 |
T |
|
| Q |
225 |
cgcaacaactttttactctatatccaaccatgttttctttatattgtcacttcattatgtccaacaattcaa |
296 |
Q |
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| ||||||||||||||| ||||||||| ||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
8136032 |
cacaacaactttttactttatatccaatcattttttctttatattgtcatttcattatgtccaacaattcaa |
8135961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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