View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8259_low_6 (Length: 323)
Name: NF8259_low_6
Description: NF8259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8259_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 23944183 - 23944504
Alignment:
| Q |
1 |
cgaaaccgcctgaccctcccgacaagagtggtgataagggaatgcttgatgcaagagataaaaatggatcaaaacagcccatgctcatatccttccgaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23944183 |
cgaaaccgcctgaccctcccgacaagagtggtgacaagggaatgcttgatgcaagagataaaaatggatcaaaacagcccatgctcatatccttccgaga |
23944282 |
T |
|
| Q |
101 |
caaggtcttgggatcgcaacctactgttataaaggaaagagttgatctggtggcgaagaaacttgcacaggtcgaacatataaagggaaatagattgctc |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23944283 |
caaggtcttaggatcgcaacctactgttataaaggaaagagttgatctggtggcgaagaaacttgcacaggtcgaacatataaagggaaatagattgctc |
23944382 |
T |
|
| Q |
201 |
ccaatgctccatgttcaagattcagtgatggaggaactcagtcttccgtataaagggtgtttgatcgtgaaacttctcggaaaatcgattggatacaaca |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23944383 |
ccaatgcttcatgttcaagattcagtgatggaggaactcaatcttccgtataaagggtgtttgatcgtgaaacttctcggaaaatcgattggatacaaca |
23944482 |
T |
|
| Q |
301 |
tgatgaagacaagacttgaaag |
322 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
23944483 |
tgatgaagacaagacttgaaag |
23944504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 78 - 312
Target Start/End: Complemental strand, 54817858 - 54817622
Alignment:
| Q |
78 |
cccatgctcatatccttccgagacaaggtcttgggatcgcaacctactgttataaaggaaagagttgatctggtggcgaagaaacttgcacaggtcgaac |
177 |
Q |
| |
|
||||||||||| |||||||| |||||||| |||| |||||| ||| |||||||||||||| ||| ||||||||||| || || || ||||| || |||| |
|
|
| T |
54817858 |
cccatgctcatgtccttccgtgacaaggttttggaatcgcagccttttgttataaaggaaaaagtggatctggtggcaaacaagctagcacaagttgaac |
54817759 |
T |
|
| Q |
178 |
atat-aaaggga-aatagattgctcccaatgctccatgttcaagattcagtgatggaggaactcagtcttccgtataaagggtgtttgatcgtgaaactt |
275 |
Q |
| |
|
| || ||||| | ||||||||| | |||||||| |||||||||||| |||||||||||| | ||| | || |||||||| |||||| ||||||||| |
|
|
| T |
54817758 |
acatcaaaggtataatagattgatgccaatgcttcatgttcaagatagtgtgatggaggaattaagtgtgccatataaaggatgtttggcagtgaaactt |
54817659 |
T |
|
| Q |
276 |
ctcggaaaatcgattggatacaacatgatgaagacaa |
312 |
Q |
| |
|
|| | ||| | |||| ||||| ||||||||||||| |
|
|
| T |
54817658 |
cttgacaaaaagcttggttacaatatgatgaagacaa |
54817622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University