View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8259_low_7 (Length: 313)

Name: NF8259_low_7
Description: NF8259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8259_low_7
NF8259_low_7
[»] chr7 (1 HSPs)
chr7 (17-313)||(36376985-36377281)


Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 36376985 - 36377281
Alignment:
Q  17 aacttttaagtgggataacatatggctattgaaaaagaggaaatccaacacaaaatcattagcagtcgattatttctactacttannnnnnngaaaaata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||||||||    
T  36376985 aacttttaagtgggataacatatggctattgaaaaagaggaaatccaacacaaaatcattagcagtcgattatttatactacttatttttttgaaaaata 36377084  T
Q  117 tttctactacttatttatcctgcatgattgagcattggtacgtggcatatttcttacttattcatgtcattatcctgcatatgctactttgacttgtgtt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36377085 tttctactacttatttatcctgcatgattgagcattggtacgtggcatatttcttacttattcatgtcattatcctgcatatgctactttgacttgtgtt 36377184  T
Q  217 tgtccattgaataataaaaatgataatgattaacccattcaatcatttcaatagtaatacgtgtatctcttttccaccctccataattagatttatt 313  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36377185 tgtccattgaataataaaaatgataatgattaacccattcaaacatttcaatagtaatacgtgtatctcttttccaccctccataattagatttatt 36377281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University