View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_high_1 (Length: 708)
Name: NF8260A_high_1
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 159 - 558
Target Start/End: Complemental strand, 6958665 - 6958266
Alignment:
| Q |
159 |
gattagagtatagtagagtaagtacctgaagagttgcatcaccactaattgtaactacagagtccacatcattgacaggctttgtcaaattggttcgaat |
258 |
Q |
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| T |
6958665 |
gattagagtatagtagagtaagtacctgaagagttgcatcaccactaattgtaactacagagtccacatcattgacaggctttgtcaaattggttcgaat |
6958566 |
T |
|
| Q |
259 |
ctcaactttccattcaatcaacaaaagtttatggaatcacattacacctatgcctatttttcaagagtaagaccgacaattttcaagcagaattcaaact |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6958565 |
ctcaactttccattcaatcaacaaaagtttatggaatcacattacacctatgcctatttttcaagagtaagaccgacaattttcaagcagaattcaaact |
6958466 |
T |
|
| Q |
359 |
tcaaatgacactaaaaacctacaactattcctaccatattaccatccttataaaacataagccaaaaatcacaataacacttatattgatgtaatctaga |
458 |
Q |
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||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6958465 |
tcaaatgacactaaaaacctataactattcctaccaaagtaccatccttataaaacataagccaaaaatcacaataacacttatactgatgtaatctaga |
6958366 |
T |
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| Q |
459 |
aaccacaaaccaaacctgcttgaaagagagctaaaggtgttaatcaaatattacaatataatgttacttgaaaatgaccatatcatagtaagatagattc |
558 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6958365 |
aaccacaaaccaaacctgcttgaaagagagctaaaggtgttaatcaaatattgcaatataatgttacttgaaaatgaccatatcatagtaagatagattc |
6958266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 6958805 - 6958693
Alignment:
| Q |
22 |
atatattgaattcaaagaatatgctagctactgctcataaatttgtagactttgatttcaattagttttcagcataaaatttcaatctttaaaatgataa |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6958805 |
atatattgaattcaaagaatatgctagctactgctcataaatttgtagactttgatttcaattagttttcagcataaaatttcaatctttaaaatgataa |
6958706 |
T |
|
| Q |
122 |
tatctacacgaac |
134 |
Q |
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||||||||||||| |
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| T |
6958705 |
tatctacacgaac |
6958693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 589 - 690
Target Start/End: Complemental strand, 6956893 - 6956792
Alignment:
| Q |
589 |
agaaatatggtgaagatgttttgaaacgattctacacgttacactgcaatccaccagaaataccaatggagatgggaatcaaactcggcaaagatgttga |
688 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6956893 |
agaaatatggtgaagatgttttgaaaagattctacacgttacactgcaatccaccagaaataccaatagagatgggaatcaaactcggcaaagatgttga |
6956794 |
T |
|
| Q |
689 |
tg |
690 |
Q |
| |
|
|| |
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|
| T |
6956793 |
tg |
6956792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 30575291 - 30575384
Alignment:
| Q |
22 |
atatattgaattcaaagaatatgctagctactgctcataaatttgtagactttgatttcaattagttttcagcataaaatttcaatctttaaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30575291 |
atatattgaattcaaagaatatgctagctactgctcatgaatttgaagactttgatttcaattagttttcagcataaaacttcaatctttaaaa |
30575384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 23007023 - 23007116
Alignment:
| Q |
22 |
atatattgaattcaaagaatatgctagctactgctcataaatttgtagactttgatttcaattagttttcagcataaaatttcaatctttaaaa |
115 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
23007023 |
atatattgaattcaaagaatatgcttgctactgctcatgaatttgaagactttgatttcaattagttttcggcataaaacttcaatctttaaaa |
23007116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 375
Target Start/End: Complemental strand, 31081843 - 31081743
Alignment:
| Q |
279 |
acaaaagtttatggaatcacattacacct-atgcctatttttcaaga---gtaagaccgacaattttcaagcagaattcaaacttcaaatgacactaaaa |
374 |
Q |
| |
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||||||||||||||||||| | ||||| || |||||| ||||||| |||||||| |||||||| | ||||||| |||||||||||||||| |||| |
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| T |
31081843 |
acaaaagtttatggaatcatggtgcaccttattcctattattcaagaagtgtaagacctgcaattttctatcagaattaaaacttcaaatgacacaaaaa |
31081744 |
T |
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| Q |
375 |
a |
375 |
Q |
| |
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|
| T |
31081743 |
a |
31081743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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