View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_high_14 (Length: 414)
Name: NF8260A_high_14
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 27 - 207
Target Start/End: Original strand, 5034536 - 5034712
Alignment:
| Q |
27 |
agtcacgaacaagaactatttaaccatgtttagagaagtttctaatttaatatcaaaatgatgaatggaatagatatttggagattcaaccaaaagtaaa |
126 |
Q |
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| T |
5034536 |
agtcatgaacaatgactatttcaccatgcttggagaagtttctaatttcacatcaatatga---atgaaatagatatcaggagattcaaccaaat-taaa |
5034631 |
T |
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| Q |
127 |
aagttttgttgaatggtaaacataaaacaggtaaaagactttgaataattattgacattctaagcacataaaggcagattg |
207 |
Q |
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| T |
5034632 |
aagatgtattgaatgttaaacataaaactggtaaaagactttgaataattattaacattctaagcacataaaggaagattg |
5034712 |
T |
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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 2489480 - 2489542
Alignment:
| Q |
183 |
attctaagcacataaaggcagattgtgagtaagaaaccaaactctaattgacacaaggttgat |
245 |
Q |
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| T |
2489480 |
attcgaagcacataaaggcagattgtgagtaagaaaccaaagtataattgaaacaaggttgat |
2489542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 2627044 - 2626953
Alignment:
| Q |
155 |
aggtaaaagactttgaataattattgacattctaagcacataaaggcagattgtgagtaagaaaccaaactctaattgacacaaggttgata |
246 |
Q |
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| T |
2627044 |
aggtaaaagactttaggtaattattgacattctaaacacataaaggcagaatccgagtaagaagctcaagtctaatagacataaggttgata |
2626953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 2489432 - 2489483
Alignment:
| Q |
59 |
gagaagtttctaatttaatatcaaaatgatgaatggaatagatatttggagattc |
113 |
Q |
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| T |
2489432 |
gagaagtttctaatttaaaatcaaa---atgaatgaaatagatatttagagattc |
2489483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 39536963 - 39536878
Alignment:
| Q |
96 |
atagatatttggagattcaaccaaaagtaaaaagttttgttgaatggtaaacataaaacaggtaaaagactttgaataattattgaca |
183 |
Q |
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| T |
39536963 |
atagatgtttagagagtcaaccaaa--ttaaaagctttgttgaacgataaacataaaatatgtaaaagactttgagtaattattgaca |
39536878 |
T |
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