View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_high_18 (Length: 341)
Name: NF8260A_high_18
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 97 - 224
Target Start/End: Complemental strand, 29776409 - 29776282
Alignment:
| Q |
97 |
ttggtgttgaagaagttgttggatgagggcgtagtgaagcgcgaagatttgtggattacctctaaactctggtttgtatgaatgttttagctaatttatg |
196 |
Q |
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| T |
29776409 |
ttggtgttgaagaagttgttcgatgagggcgtagtgaagcgcgaagatttgtggattacctctaaactctggtttgtatgaatgttttagctaatttatg |
29776310 |
T |
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| Q |
197 |
aatgtgttagtcttgttcactgtttagt |
224 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
29776309 |
aatgtgttagtcttgttcactgtttagt |
29776282 |
T |
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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 29786751 - 29786681
Alignment:
| Q |
103 |
ttgaagaagttgttggatgagggcgtagtgaagcgcgaagatttgtggattacctctaaactctggtttgt |
173 |
Q |
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|||||||| ||||| | || ||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
29786751 |
ttgaagaaattgtttgccgaaggcgtagtgaaacgtgaagatttgtggattacctctaaactctggtttgt |
29786681 |
T |
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