View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_high_28 (Length: 277)
Name: NF8260A_high_28
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 268
Target Start/End: Complemental strand, 55104 - 54845
Alignment:
| Q |
7 |
aatattccatagcattccacttataccgtgcatatatatgtatattaattaattagtctttttattataattataaagctctagctggttataaaaagaa |
106 |
Q |
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| T |
55104 |
aatattccatagcattccacttataccgtgcatatatatgtatattaattaattagtctttttattataattataaagctctagctggttataaaaagaa |
55005 |
T |
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| Q |
107 |
aaattaatgtatgtaaggtctcttttgtgggcagacatattctacaaagaaagaattgtaataagaaaatgtcataattaggggtatcttacttttgaag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55004 |
aaattaatgtatgtaaggtctcttttgtgggcagacatattctacaaagaaagaattgtaataagaaaatgtcataattaggggtatcttacttttgaag |
54905 |
T |
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| Q |
207 |
cttagtgccttaatcnnnnnnnnnnnnctttgatgtttgatcgtatcctaattaagtataat |
268 |
Q |
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| T |
54904 |
cttagtgccttaatc--tatatatatactttgatgtttgatcgtatcctaattaagtataat |
54845 |
T |
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