View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_high_6 (Length: 498)
Name: NF8260A_high_6
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_high_6 |
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| [»] scaffold0902 (1 HSPs) |
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| [»] scaffold1652 (1 HSPs) |
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| [»] scaffold1176 (1 HSPs) |
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| [»] scaffold1801 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 228 - 491
Target Start/End: Complemental strand, 37252848 - 37252594
Alignment:
| Q |
228 |
tgttgtttctcggtttcgatctgtgcgacgacgatttattcattcgattattttctgtaatctatttattactttaattaatcagtgatacattttttat |
327 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
37252848 |
tgttgtttctctgtttcgatctgtgcgacgacgatttattcattcgattattttctgtaatctatttattactttaattaatcagtgacacattttttct |
37252749 |
T |
|
| Q |
328 |
tcttttcaacgatcactcctatgttactacttccttgcagcaattattatttatcttattgtcgatcatcgttttcatttgaatgaattgtgtatctttc |
427 |
Q |
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|||| | || | | | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37252748 |
tcttct------tcttttcaacgttactacttccttgca---attattatttatcttattgtcgatcatcgttttcatttgaatgaattgtgtatctttc |
37252658 |
T |
|
| Q |
428 |
aacaacaacaacaaaaattagtagtaggaaaggaaaaataaataaattccatcaatattcttcg |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37252657 |
aacaacaacaacaaaaattagtagtaggaaaggaaaaataaataaattccatcaattttcttcg |
37252594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 37253065 - 37252927
Alignment:
| Q |
23 |
cttactccatcatccatctccactcctccttctgaaggaccttccgaaaacggcgccgctttgaacagatttaccgttgccggatctgctgctgtggtgg |
122 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37253065 |
cttactccatcatccatttccactcctccttccgaaggaccttccgaaaacggtgccgctttgaacagatttaccgttgccggatctgctgctgtagtgg |
37252966 |
T |
|
| Q |
123 |
ttttcgccgccgctttgatgctatagagagttactcgag |
161 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |
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| T |
37252965 |
ttttcgccgccgctttgatactatagagagttactcgag |
37252927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 37232815 - 37232684
Alignment:
| Q |
24 |
ttactccatcatccatctccactcctccttctgaaggaccttccgaaaacggcgccgctttgaacagatttaccgttgccggatctgctgctgtggtggt |
123 |
Q |
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||||||||||||| ||||||||||||||| |||||| ||| || |||||||||||||||||| ||||| ||||||||||||||||||||||| ||| | |
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| T |
37232815 |
ttactccatcatcgatctccactcctcctgctgaagcaccatc---aaacggcgccgctttgaatagattcaccgttgccggatctgctgctgttgtgat |
37232719 |
T |
|
| Q |
124 |
tttcgccgccgctttgatgctatagagagttactc |
158 |
Q |
| |
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|||||| |||||||||||| | ||||||||||||| |
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| T |
37232718 |
tttcgctgccgctttgatgatgtagagagttactc |
37232684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 37244960 - 37244881
Alignment:
| Q |
70 |
aaacggcgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctataga |
149 |
Q |
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||||||||||||||| |||||||| || |||||||||||||||||||| ||||||||||| || | ||||||| |||||| |
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| T |
37244960 |
aaacggcgccgctttcaacagattcactgttgccggatctgctgctgttgtggttttcgctgctgttttgatgatataga |
37244881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 37257198 - 37257059
Alignment:
| Q |
24 |
ttactccatcatccatctccactcctccttctgaag------gaccttccgaaaa---cggcgccgctttgaacagatttaccgttgccggatctgctgc |
114 |
Q |
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||||||||||||||||||| ||| |||||||||||| |||||| || || || ||||||||| |||||||| |||||||| ||||||||||| |
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| T |
37257198 |
ttactccatcatccatctctactactccttctgaagcaccttcaccttcagacaactccgccgccgcttttaacagattcaccgttgctggatctgctgc |
37257099 |
T |
|
| Q |
115 |
tgtggtggttttcgccgccgctttgatgctatagagagtt |
154 |
Q |
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||| ||||||||||||| ||||||||| | ||||||||| |
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| T |
37257098 |
tgttatggttttcgccgctgctttgatgatgtagagagtt |
37257059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 37237742 - 37237700
Alignment:
| Q |
24 |
ttactccatcatccatctccactcctccttctgaaggaccttc |
66 |
Q |
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||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
37237742 |
ttactccatcatccatctctactcctccttctgaagcaccttc |
37237700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 37256990 - 37256922
Alignment:
| Q |
230 |
ttgtttctcggtttcgatctgtgcgacgacgatttattcattcgattattttctgtaatctatttatta |
298 |
Q |
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||||| ||| ||||||||||||| ||| || ||| ||||||| |||||||||||||||||||| |||| |
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| T |
37256990 |
ttgttgctctgtttcgatctgtgtgactaccattcattcattttattattttctgtaatctattgatta |
37256922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 14316766 - 14316682
Alignment:
| Q |
71 |
aacggcgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagtta |
155 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || ||||||||| | |||||||||| |
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| T |
14316766 |
aacgacgccgctttgaacagatttacccttgccggatctgctgctgtcgtggttttcgctgctgctttgatgatgtagagagtta |
14316682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 14254039 - 14253954
Alignment:
| Q |
70 |
aaacggcgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagtta |
155 |
Q |
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||||| ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| || ||||||||| | |||||||||| |
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| T |
14254039 |
aaacgacgccgctttgaacagatttacagttgctggatctgctgctgtcgtggttttcgctgctgctttgatgatgtagagagtta |
14253954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 14248223 - 14248144
Alignment:
| Q |
76 |
cgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagtta |
155 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||| |||||||| | || ||||||||| | |||||||||| |
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| T |
14248223 |
cgccgctttgaacagatttacagttgccggatctactgctgtcgtggtttttgttgctgctttgatgatgtagagagtta |
14248144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 3277 - 3200
Alignment:
| Q |
78 |
ccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagtta |
155 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||| | || ||||||||| | |||||||||| |
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| T |
3277 |
ccgctttgaacagatttacagttgccggatctgctgctgtcgtggttttcacggctgctttgatgatgtagagagtta |
3200 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 595 - 670
Alignment:
| Q |
81 |
ctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagttac |
156 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||| | || ||||||||| | ||||||||||| |
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| T |
595 |
ctttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgtagagagttac |
670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 371 - 450
Alignment:
| Q |
76 |
cgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagtta |
155 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||| ||||||||| || ||||||||| | |||||||||| |
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|
| T |
371 |
cgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcattgctgctttgatgatgtagagagtta |
450 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1801 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1801
Description:
Target: scaffold1801; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 268 - 308
Alignment:
| Q |
77 |
gccgctttgaacagatttaccgttgccggatctgctgctgt |
117 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
268 |
gccgctttgaacagatttacagttgccggatctgctgctgt |
308 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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