View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_10 (Length: 520)
Name: NF8260A_low_10
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 99 - 499
Target Start/End: Original strand, 46503193 - 46503593
Alignment:
| Q |
99 |
ccccacaagaactacaaagcaataagccaaacactctcttttgctcttgtttcttcctacatacaaaccaccttcttttctattttgtcatatgaacata |
198 |
Q |
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| T |
46503193 |
ccccacaagaactacaaagcaataagccaaacactctcttttgctcttgtttcttcctacatacaaaccaccttcttttctattttgtcatatgaacata |
46503292 |
T |
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| Q |
199 |
tctatatcttaaaacacagtgattattatttagttttttaacaaagaatggcttcatcatctgaactaggcttggattgcaagccacatagctactccat |
298 |
Q |
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| T |
46503293 |
tctatatcttaaaaaacagtgcttataatttatttttttaacaaagaatggcttcatcatctgaactaggcttggattgcaagccacatagctactccat |
46503392 |
T |
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| Q |
299 |
gttactgaaatcatttggagaacaaagtgatcaaagctacaaactcgaagaatttgtttctcgcttagaagaagaacgtctcaaaatcgatgctttcaaa |
398 |
Q |
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| T |
46503393 |
gttactgaaatcatttggagaacaaagtgatcaaagctacaaactcgaagaatttgtttctcgcttagaagaagaacgtctcaaaatcgatgctttcaaa |
46503492 |
T |
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| Q |
399 |
cgtgagcttcctctctgcatgcaacttctcacaaacggtacactttcaaaccaccttttctttcttttatatgtaacaaactatttaattatttgtccga |
498 |
Q |
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| T |
46503493 |
cgtgagcttcctctctgcatgcaacttctcacaaacggtacactttcaaaccaccttttctttcttttatatgtaacaaactatttaattatttgtccga |
46503592 |
T |
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| Q |
499 |
g |
499 |
Q |
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| T |
46503593 |
g |
46503593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 46503107 - 46503166
Alignment:
| Q |
13 |
agatgatcctctcttgatcctccttgagttcataaaccaacataccttcccttttatata |
72 |
Q |
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| T |
46503107 |
agatgatcctctcttgatcctccttgagttcataaaccaacataccttcccttttatata |
46503166 |
T |
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