View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_111 (Length: 336)

Name: NF8260A_low_111
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_111
NF8260A_low_111
[»] chr2 (3 HSPs)
chr2 (23-334)||(4111449-4111760)
chr2 (91-283)||(28579934-28580128)
chr2 (130-285)||(27556087-27556245)
[»] chr3 (2 HSPs)
chr3 (57-285)||(5699530-5699760)
chr3 (189-285)||(6075476-6075575)
[»] chr7 (4 HSPs)
chr7 (98-285)||(11898102-11898293)
chr7 (130-283)||(5712860-5713014)
chr7 (91-166)||(24469513-24469588)
chr7 (91-166)||(24474461-24474536)
[»] chr8 (3 HSPs)
chr8 (159-288)||(15663234-15663366)
chr8 (116-283)||(15551119-15551290)
chr8 (116-261)||(22502399-22502547)
[»] chr4 (3 HSPs)
chr4 (189-283)||(18448525-18448622)
chr4 (202-285)||(11476179-11476263)
chr4 (138-288)||(20880795-20880945)
[»] chr1 (1 HSPs)
chr1 (53-133)||(25234375-25234453)
[»] chr5 (1 HSPs)
chr5 (130-275)||(19079922-19080069)


Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 23 - 334
Target Start/End: Original strand, 4111449 - 4111760
Alignment:
Q  23 attatgacgtttcaagagtttctatttttcatttacttttggattatgctgagaacttgttgttgatatatttatgagatttgagacatgttgttgagat 122  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4111449 attatgacgtgtcaatagtttctatttttcatttacttttggattatggtgagaacttgttgttgatatatttatgagatttgagacatgttgttgagat 4111548  T
Q  123 tatggattatctgatatatatgagatattgtttgtattccgctgcgagattttataaatctgaatgatgcatgtttttgaaaatgatgacgtaacatctt 222  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  4111549 tatggattatctgatatatataagatattgtttgtattccgctgcgagattttataaatccgaattatgcatgtttttgaaaatgatgacgtaacatctt 4111648  T
Q  223 gaaccttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttacagtgcaaagtgaaggcaagcagcaagatgactttcatc 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||    
T  4111649 gaaccttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttaccgtgcaaggtgaaggcaaggagcaagatgactttcatc 4111748  T
Q  323 ctctctttgttt 334  Q
    ||||||||||||    
T  4111749 ctctctttgttt 4111760  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 91 - 283
Target Start/End: Original strand, 28579934 - 28580128
Alignment:
Q  91 tatttatgagatttgagacatgttgttgagattatggat-tatctgatatatatgagatattgtttgtattccgctgcgagattttataaatctgaatga 189  Q
    ||||||||||||||||||| ||||||||| ||| ||||| ||||||| |||| ||||||  ||||| |||| || ||||||||||   ||| |  ||| |    
T  28579934 tatttatgagatttgagacttgttgttgatattctggatgtatctgagatatttgagatgctgtttttatttcgttgcgagatttatgaaaaccaaatta 28580033  T
Q  190 tgcatgttttt-gaaaatgatgacgtaacatcttgaaccttttgaaataattg-tttatttgcatttaatattgtttgtggggttcaaggatgtta 283  Q
    ||||||||||  ||||||||||||||| ||||||||||  ||| || ||| || |||||||||||| ||||||  || |||||||||||| |||||    
T  28580034 tgcatgttttaagaaaatgatgacgtatcatcttgaactcttt-aattaaatgatttatttgcattaaatattacttttggggttcaagggtgtta 28580128  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 285
Target Start/End: Complemental strand, 27556245 - 27556087
Alignment:
Q  130 tatctgatatatatgagatattgtttgtattccgctgcgagattttat-aaatctgaatgatgcatgttttt--gaaaatgatgacgtaacatcttgaac 226  Q
    ||||||| |||| |||||| |||||| |||||||||||||| |||||| ||| | |||| ||||||||||||  |||||| ||||||| |||||||||||    
T  27556245 tatctgagatatttgagatgttgtttttattccgctgcgag-ttttatgaaaaccgaattatgcatgtttttgagaaaattatgacgtgacatcttgaac 27556147  T
Q  227 -cttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttaca 285  Q
     |||||||   |||  |||| ||||||| | ||||| || |||||| ||||| |||||||    
T  27556146 tcttttgattaaatgatttagttgcattaattattgcttctggggtacaagggtgttaca 27556087  T

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Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 57 - 285
Target Start/End: Original strand, 5699530 - 5699760
Alignment:
Q  57 acttttggattatgctgagaact-tgttgttgatatatttatgagatttgagacatgttgttgagattatggattatctgatatatatgagatattgttt 155  Q
    ||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |  |  ||||||||| || |||| |||||| ||||||    
T  5699530 acttttggattatgctgagaactctgttgttgatgtatatatgagatttgagacatgttgttcatgtc-tggattatcggagatatttgagatgttgttt 5699628  T
Q  156 gtattccgctgcgagattttat-aaatctgaatgatgcatgttttt-gaaaatgatgacgtaacatcttgaaccttttgaaataattgtttatttgcatt 253  Q
     ||||||||| | || |||||| |||||  ||| |||||||||||  ||||||||||  ||| |||||||||| || |||||||| ||||||||||||||    
T  5699629 ttattccgctacaagtttttatgaaatccaaattatgcatgttttgagaaaatgatggagtagcatcttgaacattatgaaataactgtttatttgcatt 5699728  T
Q  254 taatattgtttgtggggttcaaggatgttaca 285  Q
     |||||||||||| ||||||||||||||||||    
T  5699729 aaatattgtttgtagggttcaaggatgttaca 5699760  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 6075575 - 6075476
Alignment:
Q  189 atgcatgtttttga--aaatgatgacgtaacatcttgaaccttttgaaataattg-tttatttgcatttaatattgtttgtggggttcaaggatgttaca 285  Q
    ||||||||||||||  ||||||| |||||||||||||||   ||| || ||| || |||||||||||| |||||| |||||||||||||| | |||||||    
T  6075575 atgcatgtttttgagaaaatgataacgtaacatcttgaattcttttaattaaatgatttatttgcattaaatattttttgtggggttcaacggtgttaca 6075476  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 98 - 285
Target Start/End: Complemental strand, 11898293 - 11898102
Alignment:
Q  98 gagatttgagacatgttgttgagattatggatt-atctgatatatat-gagatattgtttgtattccgctgcgagattttat-aaatctgaatgatgcat 194  Q
    |||||| ||||| ||||||||||| |||||||| ||| || || | | |||||||||||| |||||||||||||| |||||| ||| ||||||  |||||    
T  11898293 gagattggagacttgttgttgagaatatggattcatccgaaatgttttgagatattgtttttattccgctgcgag-ttttatgaaaactgaattctgcat 11898195  T
Q  195 gtttttga-aaatgatgacgtaacatcttgaa-ccttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttaca 285  Q
    ||||||||    |||| ||||||||||||||| |||||| ||||||||||||||| ||||| ||||||  ||||||||||||||| |||||||    
T  11898194 gtttttgagttttgataacgtaacatcttgaatcctttttaaataattgtttattagcattaaatatttcttgtggggttcaagggtgttaca 11898102  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 283
Target Start/End: Original strand, 5712860 - 5713014
Alignment:
Q  130 tatctgatatatatgagatattgtttgtattccgctgcgagattttat-aaatctgaatgatgcatgttttt-gaaaatgatgacgtaacatcttgaac- 226  Q
    ||||||| |||| |||||| |||||| |||| |||| |||| |||||| ||| |||||| |||||||||||  |||||||| ||| ||||||||||||      
T  5712860 tatctgagatatttgagatgttgttt-tatttcgctacgag-ttttatgaaaactgaattatgcatgttttgagaaaatgaagacataacatcttgaatt 5712957  T
Q  227 cttttgaaataattg-tttatttgcatttaatattgtttgtggggttcaaggatgtta 283  Q
    |||||||| |||||| |||||||||||| ||||||| ||||||||||||||| |||||    
T  5712958 cttttgaa-taattgatttatttgcattaaatattgcttgtggggttcaagggtgtta 5713014  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 24469513 - 24469588
Alignment:
Q  91 tatttatgagatttgagacatgttgttgagattatggat-tatctgatatatatgagatattgtttgtattccgctg 166  Q
    |||||| |||||||||||| ||||||||||||| | ||| ||||||| |||| |||||| |||||| ||||||||||    
T  24469513 tatttaagagatttgagacttgttgttgagattctagatgtatctgaaatatttgagatgttgttt-tattccgctg 24469588  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 24474461 - 24474536
Alignment:
Q  91 tatttatgagatttgagacatgttgttgagattatggat-tatctgatatatatgagatattgtttgtattccgctg 166  Q
    |||||| |||||||||||| ||||||||||||| | ||| ||||||| |||| |||||| |||||| ||||||||||    
T  24474461 tatttaagagatttgagacttgttgttgagattctagatgtatctgaaatatttgagatgttgttt-tattccgctg 24474536  T

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Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 159 - 288
Target Start/End: Original strand, 15663234 - 15663366
Alignment:
Q  159 ttccgctgcgagattttataaat-ctgaatgatgcatgtttttga--aaatgatgacgtaacatcttgaac-cttttgaaataattgtttatttgcattt 254  Q
    |||||||||||| |||||||||  |||||| ||||||||||||||  |||||||||||||||||||| ||| |||||||   ||   ||||||||||||     
T  15663234 ttccgctgcgag-ttttataaaaactgaattatgcatgtttttgagaaaatgatgacgtaacatcttaaactcttttgattaaacgatttatttgcatta 15663332  T
Q  255 aatattgtttgtggggttcaaggatgttacagtg 288  Q
    |||||||||||| |||||||||| ||||| ||||    
T  15663333 aatattgtttgtagggttcaagggtgttatagtg 15663366  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 283
Target Start/End: Original strand, 15551119 - 15551290
Alignment:
Q  116 ttgagattatggat-tatctgatatatatgagatattgtttgtattccgctgcgagattttat-aaatctgaatgatgcatgttttt-gaaaatgatgac 212  Q
    |||||||| ||||| |||| || |||| | ||||||||||| ||||||||| |||| |||||| ||| | | || |||||||||||  ||||||||||||    
T  15551119 ttgagattctggatgtatccgagatatttcagatattgtttttattccgctacgag-ttttatgaaaacaggattatgcatgttttgagaaaatgatgac 15551217  T
Q  213 gtaacatcttgaac-cttttgaaataattgtttatttgcatttaatattgtttgt-ggggttcaaggatgtta 283  Q
    |||||||||||||| |||||||   |||  |||||||||||| ||||||| |||| ||||||||||| |||||    
T  15551218 gtaacatcttgaactcttttgattaaatgatttatttgcattaaatattgcttgtgggggttcaagggtgtta 15551290  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 261
Target Start/End: Original strand, 22502399 - 22502547
Alignment:
Q  116 ttgagattatggat-tatctgatatatatgagatattgtttgtattccgctgcgagattttataaatctgaatgatgcatgtttt----tgaaaatgatg 210  Q
    |||||||| ||||| ||||||| |||| |||||| |||||| ||||||||||| || || |  |||| |||||||||||||||||      ||||| |||    
T  22502399 ttgagattctggatgtatctgagatatttgagatgttgtttttattccgctgctagtttatgaaaat-tgaatgatgcatgttttgagaaaaaaataatg 22502497  T
Q  211 acgtaacatcttgaaccttttgaaataattgtttatttgcatttaatattg 261  Q
    || |||||||||||| || ||||   |||  ||||||||||||||||||||    
T  22502498 acataacatcttgaa-ctcttgattaaataatttatttgcatttaatattg 22502547  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 283
Target Start/End: Complemental strand, 18448622 - 18448525
Alignment:
Q  189 atgcatgtttttga--aaatgatgacgtaacatcttgaac-cttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgtta 283  Q
    ||||||||||||||  ||||||||||||| |||||||||| |||||||   |||  |||||||||||| |||| || ||||||||||||||| |||||    
T  18448622 atgcatgtttttgagaaaatgatgacgtagcatcttgaactcttttgattaaatgatttatttgcattaaatactgcttgtggggttcaagggtgtta 18448525  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 202 - 285
Target Start/End: Complemental strand, 11476263 - 11476179
Alignment:
Q  202 aaaatgatgacgtaacatcttgaac-cttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttaca 285  Q
    ||||||||||||| ||||||||||| |||||||    ||  |||||||||||| |||||||||||||| |||||||| |||||||    
T  11476263 aaaatgatgacgtgacatcttgaactcttttgattagatgatttatttgcattaaatattgtttgtggagttcaagggtgttaca 11476179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 288
Target Start/End: Complemental strand, 20880945 - 20880795
Alignment:
Q  138 atatatgagatattgtttgtattccgctgcgagattttataaatctgaatgatgcatgtttttgaaaatgatgacgtaacatcttgaac-cttttgaaat 236  Q
    |||| |||||| |||||| ||||||| ||| ||||||   ||| | |||| |||||||||||||| ||  |||||||||| |||||||  |||||||       
T  20880945 atatttgagatgttgtttttattccgatgcaagatttatgaaaaccgaattatgcatgtttttgagaaa-atgacgtaacgtcttgaattcttttgatta 20880847  T
Q  237 aattgtttatttgcatttaatattgtttgtggggttcaaggatgttacagtg 288  Q
    |||  ||||||||||||  |||||  ||||||||||||||| ||||||||||    
T  20880846 aatgatttatttgcattacatatttcttgtggggttcaagggtgttacagtg 20880795  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 25234453 - 25234375
Alignment:
Q  53 atttacttttggattatgctgagaactt-gttgttgatatatttatgagatttgagacatgttgttgagattatggattatc 133  Q
    |||||||||||||||||| |||| |||| |||| |||| ||||| |||||||||| ||   |||||||||||||||||||||    
T  25234453 atttacttttggattatgttgagtactttgttgatgatgtatttttgagatttgaaac---ttgttgagattatggattatc 25234375  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 275
Target Start/End: Original strand, 19079922 - 19080069
Alignment:
Q  130 tatctgatatatatgagatattgtttgtattccgctgcgagattttat-aaatctgaatgatgcatgttttt-gaaaatgatgacgtaacatcttgaac- 226  Q
    ||||||| |||  |||||| ||| || |||||||||| ||| |||||| ||| |||||| || ||| ||||  ||||||||||| ||||||||||||||     
T  19079922 tatctgagatacttgagatgttgcttttattccgctgtgag-ttttatgaaaactgaattatacatattttaagaaaatgatgatgtaacatcttgaact 19080020  T
Q  227 cttttgaaataattg-tttatttgcatttaatattgtttgtggggttcaa 275  Q
    |||||| | |||||| |  ||||||||| |||||| ||||||||||||||    
T  19080021 cttttg-attaattgatgaatttgcattaaatattatttgtggggttcaa 19080069  T

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