View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_112 (Length: 335)
Name: NF8260A_low_112
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_112 |
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Alignment Details
Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 98 - 218
Target Start/End: Original strand, 15113378 - 15113496
Alignment:
| Q |
98 |
tggtgttcctgatacttggaatatgcttttatatgcatctctcattcaaaattaactctatatagtgtattcattccatagaaaagaatttgtgatgttt |
197 |
Q |
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| T |
15113378 |
tggtgttcctgatacttggaatatgcttttatatgcatctctcattcaaaattaactc--tatagtgtattcattccatagaaaagaatttgtgaagttt |
15113475 |
T |
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| Q |
198 |
cttgtataatatattcattgt |
218 |
Q |
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| T |
15113476 |
cttgtataatatattcattgt |
15113496 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 18358896 - 18358860
Alignment:
| Q |
98 |
tggtgttcctgatacttggaatatgcttttatatgca |
134 |
Q |
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| T |
18358896 |
tggtgttcctgatacttggaatcagcttttatatgca |
18358860 |
T |
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