View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_114 (Length: 335)
Name: NF8260A_low_114
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_114 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 44159051 - 44158742
Alignment:
| Q |
14 |
ctttataaaaactaaaattgtatttcgtaggacttaactcaaccgacaaaatataaatattgttatgtcgaatacttttatctaacttctattgcaagac |
113 |
Q |
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| T |
44159051 |
ctttataaaatttaaaattgtatttcataggacctaactcaaccgacaaaatataaatattattatgtcggatacttttatctaacttctattgcaagat |
44158952 |
T |
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| Q |
114 |
tttaaagttgtgtgtgtgaattttaa---tacgttgtttgtcatttcattttaggtagaaaaaataattgaaattgcaataattatctgaataattcgga |
210 |
Q |
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| T |
44158951 |
ttcaaagttgtgtgtgtgaattttaacagtacgttgtttgtcatttcattttaggtagaaaaaataat-gaaattgcaataatcatcagaataattcgga |
44158853 |
T |
|
| Q |
211 |
gctagtagtaacatgaatctcttgttatttttaaataatcatgattctcttaattaagtaacactttaaatgcacaaaaggaagcataatattcctatat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44158852 |
gctagtagtaacatgaatctcttgttatttttaaataatcatgattctcttaattaagtaacactttaaatgcacaaaaggaagcataatattcctatat |
44158753 |
T |
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| Q |
311 |
cattctaaata |
321 |
Q |
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||||||||||| |
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| T |
44158752 |
cattctaaata |
44158742 |
T |
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