View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8260A_low_117 (Length: 331)
Name: NF8260A_low_117
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_117 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 9e-95; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 38 - 313
Target Start/End: Complemental strand, 27409958 - 27409683
Alignment:
| Q |
38 |
gggttcaacgtgccagtatctgtaactccacgtggtgggaatggcccttgcaaagcctctagttgtccagcgaatatcaacgatgtgtgtcccccggaac |
137 |
Q |
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| T |
27409958 |
gggttcaacgtgccaatttttgtaactccacaaggtgggaatggcccttgcaaagccgctagttgtccagcaaatatcaacgctgtgtgtcccgcagaac |
27409859 |
T |
|
| Q |
138 |
ttcaagtaagaggttctgatgcaggtgtcattgcttgtaaaagtgcttgcatggcttttaatacagatcaatattgttgtcgtggacgttacaatagcga |
237 |
Q |
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||||||||| ||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
27409858 |
ttcaagtaaaaggttctgatgggagtgtcgttgcttgtaagagtgcttgcttggcttttaatacagatcaatattgttgtcgtggaagttacaataccga |
27409759 |
T |
|
| Q |
238 |
agcgacatgcccacccacaaattactctatggtttttgagaaccaatgtcctgatgcttatagctatgtttacgat |
313 |
Q |
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| T |
27409758 |
agcgacatgtccacctacaaattactctatggttttcaagaaccaatgtcctgatgcctatagctatgcttacgat |
27409683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 23 - 317
Target Start/End: Original strand, 27416088 - 27416383
Alignment:
| Q |
23 |
gtgatcaacgcttatgggttcaacgtgccagtatctgtaactccacgtggtgggaatggcccttgcaaagcctctagttgtccagcgaatatcaacgatg |
122 |
Q |
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|||| |||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| || |
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| T |
27416088 |
gtgagcaacacttatgggttcaatgtgccagtatctgtaactccacgaggtgggaatggcccttgcgaagcctctagttgtccagcaaatatcaactata |
27416187 |
T |
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| Q |
123 |
tgtgt-cccccggaacttcaagtaagaggttctgatgcaggtgtcattgcttgtaaaagtgcttgcatggcttttaatacagatcaatattgttgtcgtg |
221 |
Q |
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| T |
27416188 |
tgtgtccccccggaacttcaagtaacaggttctgacttgggtgtcattgcttgtaagagtgcttgcatggcttttaatacatatcaatattgttgtcgtg |
27416287 |
T |
|
| Q |
222 |
gacgttacaatagcgaagcgacatgcccacccacaaattactctatggtttttgagaaccaatgtcctgatgcttatagctatgtttacgatgata |
317 |
Q |
| |
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| T |
27416288 |
gagattacatcaccgagggtacatgcctacccacagattactccatgttttttgagaaccaatgtcctgatgcttatagctatgcttacgatgata |
27416383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 41 - 317
Target Start/End: Complemental strand, 27388999 - 27388723
Alignment:
| Q |
41 |
ttcaacgtgccagtatctgtaactccacgtggtgggaatggcccttgcaaagcctctagttgtccagcgaatatcaacgatgtgtgtcccccggaacttc |
140 |
Q |
| |
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|||||||||||| | || |||||||||| || || | |||| ||||||| ||||||| |||||||| || |||||| |||||||||| |||| |||| |
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| T |
27388999 |
ttcaacgtgccaatgtccgtaactccacaaggcggaagtggcgattgcaaatcctctagctgtccagcaaacatcaactctgtgtgtcccgcggagcttc |
27388900 |
T |
|
| Q |
141 |
aagtaagaggttctgatgcaggtgtcattgcttgtaaaagtgcttgcatggcttttaatacagatcaatattgttgtcgtggacgttacaatagcgaagc |
240 |
Q |
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|| ||| ||||||||||| | ||||| |||||||||| |||||||| ||||||||||||| ||||||||||||||||||||| ||| ||| | ||| || |
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| T |
27388899 |
aattaaaaggttctgatggaagtgtcgttgcttgtaagagtgcttgtttggcttttaataccgatcaatattgttgtcgtggaagtttcaacaccgaggc |
27388800 |
T |
|
| Q |
241 |
gacatgcccacccacaaattactctatggtttttgagaaccaatgtcctgatgcttatagctatgtttacgatgata |
317 |
Q |
| |
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||||| ||||||||||| ||||| | | ||||||||||||||||| || ||||||||||||| ||||||||||| |
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| T |
27388799 |
aacatgtccacccacaaactactccgagatatttgagaaccaatgtccagaagcttatagctatgcttacgatgata |
27388723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 27215081 - 27214800
Alignment:
| Q |
36 |
atgggttcaacgtgccagtatctgtaactccacgtggtgggaatggcccttgcaaagcctctagttgtccagcgaatatcaacgatgtgtgtcccccgga |
135 |
Q |
| |
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|||| |||||||||||| | |||||||| |||| ||||||| ||| |||||| |||| |||||||||| ||| ||||| | ||||||||| | || |
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| T |
27215081 |
atggattcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacatcaatgttgtgtgtccttcaga |
27214982 |
T |
|
| Q |
136 |
acttcaagtaagaggttctgatgcaggtgtcattgcttgtaaaagtgcttgcatggcttttaatacagatcaatattgttgtcgtggacgttacaatagc |
235 |
Q |
| |
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|| ||||| | |||| |||||| |||| |||||||||| || ||||| ||||||| ||| |||| ||||||||||||||||| |||||||| | |
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| T |
27214981 |
gctccaagtgataggtactgatgggagtgtggttgcttgtaagagcgcttgtttggctttaaatgaagataaatattgttgtcgtggagattacaatacc |
27214882 |
T |
|
| Q |
236 |
gaagcgacatgcccacccacaaattactctatggtttttgagaaccaatgtcctgatgcttatagctatgtttacgatgata |
317 |
Q |
| |
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|||| | ||| ||||||||| | || ||||||||||| ||||||| || || | |||||||||||||| |||||| |||| |
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| T |
27214881 |
gaagaaaaatgtccacccacagactattctatggttttcaagaaccagtgcccgggtgcttatagctatgcttacgacgata |
27214800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 27432790 - 27432509
Alignment:
| Q |
36 |
atgggttcaacgtgccagtatctgtaactccacgtggtgggaatggcccttgcaaagcctctagttgtccagcgaatatcaacgatgtgtgtcccccgga |
135 |
Q |
| |
|
|||| |||||||||||| | |||||||| |||| ||||||| ||| |||||| |||| |||||||||| ||| || || | |||||| || | || |
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| T |
27432790 |
atggattcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacattaatgttgtgtgcccttcaga |
27432691 |
T |
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| Q |
136 |
acttcaagtaagaggttctgatgcaggtgtcattgcttgtaaaagtgcttgcatggcttttaatacagatcaatattgttgtcgtggacgttacaatagc |
235 |
Q |
| |
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|| ||||| | ||||||||||| |||| |||||||||| || ||||| ||||||| || |||| ||||||||||||||||| |||||||| | |
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| T |
27432690 |
gctccaagtgataggttctgatgggagtgtggttgcttgtaagagcgcttgtttggctttaaacgaagataaatattgttgtcgtggagattacaatacc |
27432591 |
T |
|
| Q |
236 |
gaagcgacatgcccacccacaaattactctatggtttttgagaaccaatgtcctgatgcttatagctatgtttacgatgata |
317 |
Q |
| |
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|||| | ||| ||||||||| | |||||||||||||| |||||||||| || | |||||||||||||| |||||| |||| |
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| T |
27432590 |
gaagaaaaatgtccacccacagactactctatggttttcaagaaccaatgcccgggtgcttatagctatgcttacgacgata |
27432509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 317
Target Start/End: Original strand, 27443820 - 27444101
Alignment:
| Q |
36 |
atgggttcaacgtgccagtatctgtaactccacgtggtgggaatggcccttgcaaagcctctagttgtccagcgaatatcaacgatgtgtgtcccccgga |
135 |
Q |
| |
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|||| |||||||||||| | |||||||| |||| ||||||| ||| |||||| |||| |||||||||| ||| ||||| | ||||||||| | || |
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| T |
27443820 |
atggattcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacatcaatgttgtgtgtccttcaga |
27443919 |
T |
|
| Q |
136 |
acttcaagtaagaggttctgatgcaggtgtcattgcttgtaaaagtgcttgcatggcttttaatacagatcaatattgttgtcgtggacgttacaatagc |
235 |
Q |
| |
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| T |
27443920 |
gctccaagtgataggtactgatgggagtgtggttgcttgtaagagcgcttgtttggctttaaatgaagataaatattgttgtcgtggagattacaatacc |
27444019 |
T |
|
| Q |
236 |
gaagcgacatgcccacccacaaattactctatggtttttgagaaccaatgtcctgatgcttatagctatgtttacgatgata |
317 |
Q |
| |
|
|||| | ||| ||||||||| | || ||||||||||| ||||||| || || | |||||||||||||| |||||| |||| |
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| T |
27444020 |
gaagaaaaatgtccacccacagactattctatggttttcaagaaccagtgcccgggtgcttatagctatgcttacgacgata |
27444101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 41 - 317
Target Start/End: Complemental strand, 27221038 - 27220762
Alignment:
| Q |
41 |
ttcaacgtgccagtatctgtaactccacgtggtgggaatggcccttgcaaagcctctagttgtccagcgaatatcaacgatgtgtgtcccccggaacttc |
140 |
Q |
| |
|
|||||||||||| | |||||||| |||| ||||||| ||| |||||| |||| |||||||||| ||| || || | |||||| || | || || | |
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| T |
27221038 |
ttcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacattaatgttgtgtgcccttcagagctcc |
27220939 |
T |
|
| Q |
141 |
aagtaagaggttctgatgcaggtgtcattgcttgtaaaagtgcttgcatggcttttaatacagatcaatattgttgtcgtggacgttacaatagcgaagc |
240 |
Q |
| |
|
|||| | ||| |||||| |||| ||||| ||||| |||||||| ||||||| ||| |||| ||||||||||||||||| || ||||| |||| |
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| T |
27220938 |
aagttattggtactgatgggagtgtgattgcctgtaagagtgcttgtttggctttaaatgaagataaatattgttgtcgtggagatttcaatactgaaga |
27220839 |
T |
|
| Q |
241 |
gacatgcccacccacaaattactctatggtttttgagaaccaatgtcctgatgcttatagctatgtttacgatgata |
317 |
Q |
| |
|
| ||| ||||||||||| ||||||||| |||| |||||||||| || | |||||||||||||| |||||| |||| |
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| T |
27220838 |
aaaatgtccacccacaaactactctatgattttcaagaaccaatgccccggtgcttatagctatgcttacgacgata |
27220762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 41457923 - 41457964
Alignment:
| Q |
85 |
ttgcaaagcctctagttgtccagcgaatatcaacgatgtgtg |
126 |
Q |
| |
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||||||| |||| |||||||| |||||||||||||||||||| |
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| T |
41457923 |
ttgcaaaccctcgagttgtcccgcgaatatcaacgatgtgtg |
41457964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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