View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_122 (Length: 327)

Name: NF8260A_low_122
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_122
NF8260A_low_122
[»] chr1 (4 HSPs)
chr1 (1-313)||(11780118-11780431)
chr1 (19-191)||(10424593-10424765)
chr1 (19-101)||(1624838-1624920)
chr1 (43-102)||(30731478-30731537)
[»] chr7 (1 HSPs)
chr7 (7-308)||(17158540-17158845)
[»] chr2 (1 HSPs)
chr2 (1-308)||(12101765-12102070)
[»] chr6 (3 HSPs)
chr6 (1-305)||(14977507-14977814)
chr6 (134-305)||(11776308-11776482)
chr6 (134-172)||(24353638-24353676)
[»] chr5 (2 HSPs)
chr5 (19-305)||(5781902-5782191)
chr5 (19-305)||(19069420-19069709)
[»] chr3 (6 HSPs)
chr3 (24-165)||(16311658-16311799)
chr3 (24-165)||(18488442-18488583)
chr3 (24-165)||(18492652-18492793)
chr3 (53-110)||(16314104-16314161)
chr3 (53-110)||(18495098-18495155)
chr3 (39-101)||(19829018-19829080)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 11780118 - 11780431
Alignment:
Q  1 tcatcttgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcat 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11780118 tcatcgtgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagctcctgtgggcgcgaatgattatgttccacatcat 11780217  T
Q  101 ccgagagcgttggagtcacatctgcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctcgcagaacgcacttcatcatg 200  Q
    |||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| |||||||||    
T  11780218 ccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgcttcactctctcagaatgcatttcatcatg 11780317  T
Q  201 caa-ccgggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttga 299  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||    
T  11780318 caatcggggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaacgctgtcaaacacgttatgtagtggaaagctgaaagatgttga 11780417  T
Q  300 cgacaatgatgtcc 313  Q
    ||||||||||||||    
T  11780418 cgacaatgatgtcc 11780431  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 10424593 - 10424765
Alignment:
Q  19 gatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtca 118  Q
    ||||||||||||||| |||| | || |||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || |||||   ||  |    
T  10424593 gatgaatgtggtacacgctcgtaggaacccttaggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagaga 10424692  T
Q  119 catctgcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctcgcagaacgcac 191  Q
    ||||  | || ||  ||||||||||  |||||||||||||| ||||| | || ||||||||| ||||| ||||    
T  10424693 catcatccaccacggggttctccaatacctcccgcgatgtcagatgcaattgttccactctctcagaatgcac 10424765  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 1624838 - 1624920
Alignment:
Q  19 gatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatc 101  Q
    ||||||||||||||| |||| |||| |||||| |||||||| ||||| ||| | |||| ||||  ||| ||||||||||||||    
T  1624838 gatgaatgtggtacacgctcgtgggaacccttgggactctcgaccagctcccgcgggctcgaactattgtgttccacatcatc 1624920  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 30731537 - 30731478
Alignment:
Q  43 gcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatcc 102  Q
    |||||||| |||||||||||||| |||||||||| |  ||||| |||||||||| |||||    
T  30731537 gcacccttgggactctccaccagctcctgtgggctcacatgatcatgttccacaccatcc 30731478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 7 - 308
Target Start/End: Original strand, 17158540 - 17158845
Alignment:
Q  7 tgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgaga 106  Q
    |||| |||||||||||||||| |||||||||||||| | ||||| |||||||||||||  | ||  ||| ||||||||||||| ||||||||||||||||    
T  17158540 tgcttaacaattgatgaatgtagtacatgctcatggtcccccttgggactctccaccaactactaggggtgcgaatgattatgctccacatcatccgaga 17158639  T
Q  107 gcgttggagtcacatctgcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctcc-actctcgcagaacgcacttcatcatgc---a 202  Q
    | || | ||| |||||  |||| ||| ||||||||||||||||||||||| ||||||||||||| ||| |||||| ||||| |||||||||| |||   |    
T  17158640 gtgtcgcagtaacatcgtcaaccacagggttctccaactcctcccgcgatatcggatgcgactgatcccactctctcagaatgcacttcatcgtgcgcaa 17158739  T
Q  203 accgggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacga 302  Q
    ||  ||||||||||||||||||||||||||| ||| ||||||  ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  17158740 actaggaaacaatttcaaacactggcgtagcgagtggcagcttttcactagaaatgttgtcaaacacgttatgtagtggaaagctgaaaggtgttgacga 17158839  T
Q  303 caatga 308  Q
    ||||||    
T  17158840 caatga 17158845  T

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Target: chr2 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 12102070 - 12101765
Alignment:
Q  1 tcatcttgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgat----tatgttccaca 96  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| | |||||||||||||    |||||||||||    
T  12102070 tcatcgtgctcaacaattgatgaatgtggtacatgctcataggcacccttgggactctccaccagctcccgggggcgcgaatgattatatatgttccaca 12101971  T
Q  97 tcatccgagagcgttggagtcacatctgcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctcgcagaacgcacttcat 196  Q
    |         |  | | ||| |||||  || | |   ||||||||||||||||||||||||||| ||| |  |||||| ||||| ||| | |||| ||||    
T  12101970 t---------gtatcgtagtaacatcgtcagccatggggttctccaactcctcccgcgatgtcgaatgtgtttgctccgctctctcaggatgcacgtcat 12101880  T
Q  197 catgc---aaccgggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaaga 293  Q
    | |||   |   |||||| ||||||||||||| | || ||| || | |||||||| |||||||| |||| |||||||||||| |||||||||||||||||    
T  12101879 cgtgcacaattggggaaataatttcaaacactcgtgttgcttgtggtagctcctcgctagaaatattgttaaacacgttatgtagtggaaagctgaaaga 12101780  T
Q  294 tgttgacgacaatga 308  Q
    |||||||||||||||    
T  12101779 tgttgacgacaatga 12101765  T

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Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 14977814 - 14977507
Alignment:
Q  1 tcatcttgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcat 100  Q
    ||||| |||| |||||| ||||||||||| ||||||||||||| |||||| |||||||||||||| ||| | |||  |||||||||||||||||||||||    
T  14977814 tcatcatgctaaacaatggatgaatgtggaacatgctcatgggaacccttgggactctccaccagctcccgcggggtcgaatgattatgttccacatcat 14977715  T
Q  101 ccgagagcgttggagtcacatctgcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctcgcagaacgcacttcatcat- 199  Q
      || ||||| | ||| |||||  ||||     || ||| || ||||||||||||||||||||||||||||||||||||| | ||| |||| ||||| |     
T  14977714 aagatagcgtagcagtaacatcgtcaaccgttgggatctgcacctcctcccgcgatgtcggatgcgactgctccactctctcggaatgcacgtcatcgtg 14977615  T
Q  200 -gcaac-cgggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgtt 297  Q
     |||||  |||| ||||  |||| |||||| ||||||  | ||| || ||||||||||||  | ||||||| ||| || | ||| ||||| |||||||||    
T  14977614 cgcaactggggacacaaactcaatcactggtgtagcttctggcaacttctcactagaaatactatcaaacatgttgtgtaatgggaagctaaaagatgtt 14977515  T
Q  298 gacgacaa 305  Q
    || |||||    
T  14977514 gatgacaa 14977507  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 134 - 305
Target Start/End: Original strand, 11776308 - 11776482
Alignment:
Q  134 ggttctccaactcctcccgcgatgtcggatgcgactgctccactctcgcagaacgcacttcatcatg--caac-cgggaaacaatttcaaacactggcgt 230  Q
    |||||||||||||||||||||||| | ||||| |||||||||||||| ||||| |||| ||||| ||  ||||  |||||||||  || |||||||| ||    
T  11776308 ggttctccaactcctcccgcgatgactgatgcaactgctccactctctcagaatgcacatcatcgtgcacaacaggggaaacaacctctaacactggtgt 11776407  T
Q  231 agctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa 305  Q
    | |  || ||| |||||||  |||||| ||||||||| | ||||| | |||||||||||||||  ||||||||||    
T  11776408 aacatgtggcaactcctcatgagaaattttgtcaaacgcattatgtaatggaaagctgaaagagtttgacgacaa 11776482  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 24353638 - 24353676
Alignment:
Q  134 ggttctccaactcctcccgcgatgtcggatgcgactgct 172  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  24353638 ggttctccaactcctcccgcgatgtctgatgcaactgct 24353676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 5781902 - 5782191
Alignment:
Q  19 gatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtca 118  Q
    |||||| ||| |||| ||||||||| |||||| |||||||||||||| ||| | |||  ||||||||| |||||||||||||| || || ||   ||| |    
T  5781902 gatgaacgtgatacacgctcatgggaacccttgggactctccaccagctcccgcgggatcgaatgattgtgttccacatcatcagaaagtgtaacagtaa 5782001  T
Q  119 catctgcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctcgcagaacgcacttcatcat--gcaac-cgggaaacaat 215  Q
    ||||  | ||    |||||||||||||||| |||||||||| ||||| |||||||| ||||| ||||| |||| ||||| |  |||||  |||||||||     
T  5782002 catcatccaccgtgtggttctccaactccttccgcgatgtctgatgcaactgctcctctctctcagaatgcacgtcatcgtgcgcaacaagggaaacaac 5782101  T
Q  216 ttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa 305  Q
     || ||||||||||||||   | |||||||||||  ||||||  | |  ||||| || || | |||||||||||||||  ||||||||||    
T  5782102 ctctaacactggcgtagcacatggcagctcctcaggagaaattctattgaacacattgtgtaatggaaagctgaaagagtttgacgacaa 5782191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 19069420 - 19069709
Alignment:
Q  19 gatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtca 118  Q
    |||||||||| || | ||||||||  |||||| |||||||||||||| ||||| |||  ||||||||| |||||||||||||  || || ||   ||| |    
T  19069420 gatgaatgtgatatacgctcatggaaacccttgggactctccaccagctcctgcgggatcgaatgattgtgttccacatcattagaaagggtaacagtaa 19069519  T
Q  119 catctgcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctcgcagaacgcacttcatcat--gcaac-cgggaaacaat 215  Q
    ||||| | ||     |||||||||||||||| ||||||||| ||||| || ||||| ||||| ||||| |||| ||||| |  |||||  |||||| ||     
T  19069520 catcttccaccgtggggttctccaactcctctcgcgatgtctgatgcaaccgctcctctctctcagaatgcacgtcatcgtgcgcaacaggggaaataac 19069619  T
Q  216 ttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa 305  Q
     || ||||||||||||||  || ||||||||| |  |||||| ||||||||| | || || | |||||||||||||||  ||||||||||    
T  19069620 ctctaacactggcgtagcacgtggcagctccttaggagaaattttgtcaaacgcattgtgtaatggaaagctgaaagagtttgacgacaa 19069709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 16311799 - 16311658
Alignment:
Q  24 atgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtcacatct 123  Q
    ||||| |||| |||| | || |||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || |||||   ||  |||||     
T  16311799 atgtgatacacgctcgtaggaacccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatca 16311700  T
Q  124 gcaactacatggttctccaactcctcccgcgatgtcggatgc 165  Q
     | || ||  ||||||||||| |||||||||||||| |||||    
T  16311699 tccaccacggggttctccaacacctcccgcgatgtcagatgc 16311658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 18488583 - 18488442
Alignment:
Q  24 atgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtcacatct 123  Q
    ||||| |||| |||| | || |||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || |||||   ||  |||||     
T  18488583 atgtgatacacgctcgtaggaacccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatca 18488484  T
Q  124 gcaactacatggttctccaactcctcccgcgatgtcggatgc 165  Q
     | || ||  ||||||||||| |||||||||||||| |||||    
T  18488483 tccaccacggggttctccaacacctcccgcgatgtcagatgc 18488442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 18492793 - 18492652
Alignment:
Q  24 atgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtcacatct 123  Q
    ||||| |||| |||| | || |||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || |||||   ||  |||||     
T  18492793 atgtgatacacgctcgtaggaacccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatca 18492694  T
Q  124 gcaactacatggttctccaactcctcccgcgatgtcggatgc 165  Q
     | || ||  ||||||||||| |||||||||||||| |||||    
T  18492693 tccaccacggggttctccaacacctcccgcgatgtcagatgc 18492652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 16314161 - 16314104
Alignment:
Q  53 gactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgt 110  Q
    ||||||||||||| ||| ||||||||||| |||||| |||||||||||| || |||||    
T  16314161 gactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgt 16314104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 18495155 - 18495098
Alignment:
Q  53 gactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgt 110  Q
    ||||||||||||| ||| ||||||||||| |||||| |||||||||||| || |||||    
T  18495155 gactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgt 18495098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 19829018 - 19829080
Alignment:
Q  39 atgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatc 101  Q
    ||||| |||||| |||||||||||||| ||| | |||  ||||||||| ||||||||||||||    
T  19829018 atgggaacccttgggactctccaccagctcccgcgggttcgaatgattgtgttccacatcatc 19829080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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