View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_128 (Length: 324)
Name: NF8260A_low_128
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_128 |
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| [»] scaffold0095 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 12430154 - 12429933
Alignment:
| Q |
20 |
ttttccatctcaaacccaaccaagttcaaacttagaaattttctggttcaatttaatagttcgaatcaaataaacctaaaaccacaaaattaaaagaacc |
119 |
Q |
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| T |
12430154 |
ttttccatctcaaactcaaccaagttcaaacttagaaattttttggttcaatttaatagttcgaatcaaataaacctaaaaccacaaaattaaaagaacc |
12430055 |
T |
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| Q |
120 |
acgttttccctaaggcatggcatgtatctaaagtttccattggcagatgcctctaatgtttggtgttgcagtccttatataagagatggataaattaaac |
219 |
Q |
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| T |
12430054 |
acgttttccctaaggcatggcatgaatctaaagtttccattggcagatgcctctaatgtttggtgttgcactccttatataagagatggataagttaaac |
12429955 |
T |
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| Q |
220 |
atagttgcaacacataaaagca |
241 |
Q |
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| T |
12429954 |
atagttgcaacacataaaagca |
12429933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 162 - 317
Target Start/End: Complemental strand, 12429935 - 12429776
Alignment:
| Q |
162 |
gcagatgcctctaatgtttggtgttgcagtccttatataagagatggataaattaaacatagttgcaacacataaaagcacgt----aagctttccaatg |
257 |
Q |
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| T |
12429935 |
gcagatgcctctaatgtttggtgttgcactccttatataagagatggataagttaaacatagttgcaacacataaaagcacgtttgcacgctttccaatg |
12429836 |
T |
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| Q |
258 |
cgtttttgccgtgattttgataagctccaaattctagcttattcacttacgtgagttttt |
317 |
Q |
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| T |
12429835 |
catttttgccgtgattttgataagctctaaattctagcttattcgctaacgtgagttttt |
12429776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 11679839 - 11679879
Alignment:
| Q |
249 |
tttccaatgcgtttttgccgtgattttgataagctccaaat |
289 |
Q |
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| T |
11679839 |
tttccaaagtgtttttgccgtgattttgagaagctccaaat |
11679879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 37947 - 37878
Alignment:
| Q |
255 |
atgcgtttttgccgtgattttgataagctccaaattctagcttattcacttacgtgagtttttgccgtga |
324 |
Q |
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| T |
37947 |
atgcgtttttgccgtgattttcagaagctccaaatactagcttctttgctaacgtggttttttgccgtga |
37878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 39396854 - 39396923
Alignment:
| Q |
255 |
atgcgtttttgccgtgattttgataagctccaaattctagcttattcacttacgtgagtttttgccgtga |
324 |
Q |
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| T |
39396854 |
atgcgtttttgccgtgattttcagaagctccaaatactagcttctttgctaacgtggttttttgccgtga |
39396923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 41921989 - 41922038
Alignment:
| Q |
248 |
ctttccaatgcgtttttgccgtgattttgataagctccaaattctagctt |
297 |
Q |
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| T |
41921989 |
ctttccaatgcatttttgccgtgattctcataagctccaaatactagctt |
41922038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 622092 - 622050
Alignment:
| Q |
255 |
atgcgtttttgccgtgattttgataagctccaaattctagctt |
297 |
Q |
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| T |
622092 |
atgcgtttttgccgtgatttttaaaagctccaaatactagctt |
622050 |
T |
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