View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_14 (Length: 498)

Name: NF8260A_low_14
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_14
NF8260A_low_14
[»] chr4 (7 HSPs)
chr4 (228-491)||(37252594-37252848)
chr4 (23-161)||(37252927-37253065)
chr4 (24-158)||(37232684-37232815)
chr4 (70-149)||(37244881-37244960)
chr4 (24-154)||(37257059-37257198)
chr4 (24-66)||(37237700-37237742)
chr4 (230-298)||(37256922-37256990)
[»] chr6 (3 HSPs)
chr6 (71-155)||(14316682-14316766)
chr6 (70-155)||(14253954-14254039)
chr6 (76-155)||(14248144-14248223)
[»] scaffold0902 (1 HSPs)
scaffold0902 (78-155)||(3200-3277)
[»] scaffold1652 (1 HSPs)
scaffold1652 (81-156)||(595-670)
[»] scaffold1176 (1 HSPs)
scaffold1176 (76-155)||(371-450)
[»] scaffold1801 (1 HSPs)
scaffold1801 (77-117)||(268-308)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 228 - 491
Target Start/End: Complemental strand, 37252848 - 37252594
Alignment:
Q  228 tgttgtttctcggtttcgatctgtgcgacgacgatttattcattcgattattttctgtaatctatttattactttaattaatcagtgatacattttttat 327  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  37252848 tgttgtttctctgtttcgatctgtgcgacgacgatttattcattcgattattttctgtaatctatttattactttaattaatcagtgacacattttttct 37252749  T
Q  328 tcttttcaacgatcactcctatgttactacttccttgcagcaattattatttatcttattgtcgatcatcgttttcatttgaatgaattgtgtatctttc 427  Q
    |||| |      ||  | | | |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37252748 tcttct------tcttttcaacgttactacttccttgca---attattatttatcttattgtcgatcatcgttttcatttgaatgaattgtgtatctttc 37252658  T
Q  428 aacaacaacaacaaaaattagtagtaggaaaggaaaaataaataaattccatcaatattcttcg 491  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37252657 aacaacaacaacaaaaattagtagtaggaaaggaaaaataaataaattccatcaattttcttcg 37252594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 37253065 - 37252927
Alignment:
Q  23 cttactccatcatccatctccactcctccttctgaaggaccttccgaaaacggcgccgctttgaacagatttaccgttgccggatctgctgctgtggtgg 122  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  37253065 cttactccatcatccatttccactcctccttccgaaggaccttccgaaaacggtgccgctttgaacagatttaccgttgccggatctgctgctgtagtgg 37252966  T
Q  123 ttttcgccgccgctttgatgctatagagagttactcgag 161  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  37252965 ttttcgccgccgctttgatactatagagagttactcgag 37252927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 37232815 - 37232684
Alignment:
Q  24 ttactccatcatccatctccactcctccttctgaaggaccttccgaaaacggcgccgctttgaacagatttaccgttgccggatctgctgctgtggtggt 123  Q
    ||||||||||||| ||||||||||||||| |||||| ||| ||   |||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |    
T  37232815 ttactccatcatcgatctccactcctcctgctgaagcaccatc---aaacggcgccgctttgaatagattcaccgttgccggatctgctgctgttgtgat 37232719  T
Q  124 tttcgccgccgctttgatgctatagagagttactc 158  Q
    |||||| |||||||||||| | |||||||||||||    
T  37232718 tttcgctgccgctttgatgatgtagagagttactc 37232684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 37244960 - 37244881
Alignment:
Q  70 aaacggcgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctataga 149  Q
    ||||||||||||||| |||||||| || |||||||||||||||||||| ||||||||||| || | ||||||| ||||||    
T  37244960 aaacggcgccgctttcaacagattcactgttgccggatctgctgctgttgtggttttcgctgctgttttgatgatataga 37244881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 37257198 - 37257059
Alignment:
Q  24 ttactccatcatccatctccactcctccttctgaag------gaccttccgaaaa---cggcgccgctttgaacagatttaccgttgccggatctgctgc 114  Q
    ||||||||||||||||||| ||| ||||||||||||       |||||| || ||   || ||||||||| |||||||| |||||||| |||||||||||    
T  37257198 ttactccatcatccatctctactactccttctgaagcaccttcaccttcagacaactccgccgccgcttttaacagattcaccgttgctggatctgctgc 37257099  T
Q  115 tgtggtggttttcgccgccgctttgatgctatagagagtt 154  Q
    |||  ||||||||||||| ||||||||| | |||||||||    
T  37257098 tgttatggttttcgccgctgctttgatgatgtagagagtt 37257059  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 37237742 - 37237700
Alignment:
Q  24 ttactccatcatccatctccactcctccttctgaaggaccttc 66  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  37237742 ttactccatcatccatctctactcctccttctgaagcaccttc 37237700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 37256990 - 37256922
Alignment:
Q  230 ttgtttctcggtttcgatctgtgcgacgacgatttattcattcgattattttctgtaatctatttatta 298  Q
    ||||| ||| ||||||||||||| ||| || ||| |||||||  |||||||||||||||||||| ||||    
T  37256990 ttgttgctctgtttcgatctgtgtgactaccattcattcattttattattttctgtaatctattgatta 37256922  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 14316766 - 14316682
Alignment:
Q  71 aacggcgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagtta 155  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || ||||||||| | ||||||||||    
T  14316766 aacgacgccgctttgaacagatttacccttgccggatctgctgctgtcgtggttttcgctgctgctttgatgatgtagagagtta 14316682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 14254039 - 14253954
Alignment:
Q  70 aaacggcgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagtta 155  Q
    ||||| ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| || ||||||||| | ||||||||||    
T  14254039 aaacgacgccgctttgaacagatttacagttgctggatctgctgctgtcgtggttttcgctgctgctttgatgatgtagagagtta 14253954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 14248223 - 14248144
Alignment:
Q  76 cgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagtta 155  Q
    ||||||||||||||||||||| |||||||||||| ||||||| |||||||| |  || ||||||||| | ||||||||||    
T  14248223 cgccgctttgaacagatttacagttgccggatctactgctgtcgtggtttttgttgctgctttgatgatgtagagagtta 14248144  T

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Target: scaffold0902 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 3277 - 3200
Alignment:
Q  78 ccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagtta 155  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||| | || ||||||||| | ||||||||||    
T  3277 ccgctttgaacagatttacagttgccggatctgctgctgtcgtggttttcacggctgctttgatgatgtagagagtta 3200  T

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Target: scaffold1652 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 595 - 670
Alignment:
Q  81 ctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagttac 156  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||| | || ||||||||| | |||||||||||    
T  595 ctttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgtagagagttac 670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 371 - 450
Alignment:
Q  76 cgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagtta 155  Q
    ||||||||||||||||||||| |||||||||||| ||||||| |||||||||   || ||||||||| | ||||||||||    
T  371 cgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcattgctgctttgatgatgtagagagtta 450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1801 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 268 - 308
Alignment:
Q  77 gccgctttgaacagatttaccgttgccggatctgctgctgt 117  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  268 gccgctttgaacagatttacagttgccggatctgctgctgt 308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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