View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_141 (Length: 315)
Name: NF8260A_low_141
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_141 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 4 - 302
Target Start/End: Original strand, 29776492 - 29776790
Alignment:
| Q |
4 |
aaatagctacctccttctgattgccatataattgagcacaatcaatgtgacggtaaccggcctgtatgtataaaagaaaatatcattattcattatatta |
103 |
Q |
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| T |
29776492 |
aaatagctacctccttctgattgccatataattgagcacaatcaatgtgacggtaaccggcctgtatgtatcaaagaaaatatcattattcattatatta |
29776591 |
T |
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| Q |
104 |
tatacaaagagatttccaaaactcaagtggaaggatgaatgataatgaaaatttaccttgatggcagaagcgacggcttcagcaacgaggccaggatcgt |
203 |
Q |
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| T |
29776592 |
tatacaaagagatttccaaaactcaagtggaaggatgaatgataatgaaaatttaccttgatggcagtagcgacggcttcagcaacgaggccaggatcgt |
29776691 |
T |
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| Q |
204 |
cctcggcttgccaagttcccaagccaacggaagggattttggctccggtgttgagatcaaaatattgaattgttttggacattgtcaagcaagtgagaa |
302 |
Q |
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| T |
29776692 |
cctcggcttgccaagttcccaagccaacggaagggatcttggctccggtgttgagatcaaagaattgaattgccttggacattgtcaagcaagtgagaa |
29776790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 29786848 - 29786906
Alignment:
| Q |
11 |
tacctccttctgattgccatataattgagcacaatcaatgtgacggtaaccggcctgta |
69 |
Q |
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| T |
29786848 |
tacctccttctcattgccatagacttgagcacaatcaatgtgacggtaaccagcctgta |
29786906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 29787048 - 29787095
Alignment:
| Q |
212 |
tgccaagttcccaagccaacggaagggattttggctccggtgttgaga |
259 |
Q |
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| T |
29787048 |
tgccaagtacccaagccgacggaagggatcttggctccggtgttgaga |
29787095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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