View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_147 (Length: 312)
Name: NF8260A_low_147
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_147 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 45282309 - 45282620
Alignment:
| Q |
1 |
caagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccacccaagcagacatatctcctacgtt |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||| |
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| T |
45282309 |
caagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctccttggtt |
45282408 |
T |
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| Q |
101 |
tctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggat |
200 |
Q |
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| T |
45282409 |
tctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggat |
45282508 |
T |
|
| Q |
201 |
aatcaattaattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaatga |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282509 |
aatcaattaattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaatga |
45282608 |
T |
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| Q |
301 |
attttgagagtg |
312 |
Q |
| |
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|||||||||||| |
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| T |
45282609 |
attttgagagtg |
45282620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 45274066 - 45274377
Alignment:
| Q |
1 |
caagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccacccaagcagacatatctcctacgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
45274066 |
caagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctcctacgtt |
45274165 |
T |
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| Q |
101 |
tctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggat |
200 |
Q |
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| T |
45274166 |
tctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccctattgcggtgttggctgcacgcatggat |
45274265 |
T |
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| Q |
201 |
aatcaattaattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaatga |
300 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||| | | ||||||||||| ||||||||||||||||||||| | |
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| T |
45274266 |
aatcaattaattagtaatttcgatcacactggctatatatgtcaatgttatatgtatatatttctcttttcaatgcgagttatgttttcttcaaaaataa |
45274365 |
T |
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| Q |
301 |
attttgagagtg |
312 |
Q |
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|||||||||||| |
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| T |
45274366 |
attttgagagtg |
45274377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 5 - 253
Target Start/End: Original strand, 45293653 - 45293904
Alignment:
| Q |
5 |
acaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccacccaagcagacatatctcctacgtttcta |
104 |
Q |
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||||||||||||| | ||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
45293653 |
acaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttcta |
45293752 |
T |
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| Q |
105 |
aatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatc |
204 |
Q |
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|||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |
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| T |
45293753 |
aatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatc |
45293852 |
T |
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| Q |
205 |
aattaattagtaatttcaatcacattggc---tatatatgtcaatgttatat |
253 |
Q |
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| T |
45293853 |
aattaattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45293904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 5 - 253
Target Start/End: Original strand, 45302613 - 45302864
Alignment:
| Q |
5 |
acaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccacccaagcagacatatctcctacgtttcta |
104 |
Q |
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||||||||||||| | ||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
45302613 |
acaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttcta |
45302712 |
T |
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| Q |
105 |
aatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatc |
204 |
Q |
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|||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |
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| T |
45302713 |
aatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatc |
45302812 |
T |
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| Q |
205 |
aattaattagtaatttcaatcacattggc---tatatatgtcaatgttatat |
253 |
Q |
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||||||||||||| ||| |||||| ||| ||||| |||||||||||||| |
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| T |
45302813 |
aattaattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45302864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 9 - 312
Target Start/End: Original strand, 45270547 - 45270848
Alignment:
| Q |
9 |
ttgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccacccaagcagacatatctcctacgtttctaaatg |
108 |
Q |
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||||||||| | ||||||||| ||||||| ||||| ||||||||||||| | |||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
45270547 |
ttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctcctatgtttctaaatg |
45270646 |
T |
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| Q |
109 |
ccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaatt |
208 |
Q |
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|||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
45270647 |
ccacagcttgcataccggcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaatt |
45270746 |
T |
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| Q |
209 |
aattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagtt-atgttttcttcaaaaatgaattttga |
307 |
Q |
| |
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||||||||| ||| || ||| |||||||||| | ||| | | | ||| |||||||||||||||| |||| ||||||| |||||||||||||||||| |
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| T |
45270747 |
aattagtaacttctataacaccggctatatatatgtatg---tgtctatatatatatcttttcaatgtgagttaatgtttttttcaaaaatgaattttga |
45270843 |
T |
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| Q |
308 |
gagtg |
312 |
Q |
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||||| |
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| T |
45270844 |
gagtg |
45270848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 45293957 - 45294005
Alignment:
| Q |
264 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtg |
312 |
Q |
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| T |
45293957 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtg |
45294005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 45302917 - 45302965
Alignment:
| Q |
264 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtg |
312 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45302917 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtg |
45302965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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