View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8260A_low_149 (Length: 311)
Name: NF8260A_low_149
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_149 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 144 - 306
Target Start/End: Original strand, 34323359 - 34323520
Alignment:
| Q |
144 |
cttcaatttggtggaagtagaaatgctgatgtgttctatttataggtttaaaatgttgcatgcatgattcttgaagattctataaatgacatatggatgg |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34323359 |
cttcaatttggtggaagtagaaatgctgatgtgttgtatttataggtttaaaatgttgcatgcataattcttgaagattctataaatgacatatggatgg |
34323458 |
T |
|
| Q |
244 |
tagagagtgaaatggaagtgacataattgtcgatagattgagaatgttctggattattatagt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34323459 |
tagagagtgaaatggaagtgacataattgtcgatagatt-agaatgttctggattattatagt |
34323520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 34323211 - 34323319
Alignment:
| Q |
18 |
accaacaagaagaataagcaagagaattggtataagcgacatgttgagttgttgtagcctcatcttcattatactttgaattgaaaatatgtgtgtagtt |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34323211 |
accaacaagaagaataatcaagagaattggtataagcgacatgttgagttgttgtagcctcattttcattacactttgaattgaaaatatgtgtgtagtt |
34323310 |
T |
|
| Q |
118 |
tatgatttg |
126 |
Q |
| |
|
||||||||| |
|
|
| T |
34323311 |
tatgatttg |
34323319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 175 - 292
Target Start/End: Complemental strand, 34311622 - 34311503
Alignment:
| Q |
175 |
tgttctatttataggtt-taaaatgttgcatgcatgattcttgaagattc-tataaatgacatatggatggtagagagtgaaatggaagtgacataattg |
272 |
Q |
| |
|
|||| |||||||||||| ||||| |||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||| | |
|
|
| T |
34311622 |
tgttatatttataggttgtaaaaagttgcatgcatggttcttgaagattcatataaatgacatatggatggtaaagagtgaaatgggagtgacataatcg |
34311523 |
T |
|
| Q |
273 |
tcgatagattgagaatgttc |
292 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
34311522 |
tagatagattgagaatgttc |
34311503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 34311754 - 34311701
Alignment:
| Q |
27 |
aagaataagcaagagaattggtataagcgacatgttgagttgttgtagcctcat |
80 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||||||||| ||||||||| |
|
|
| T |
34311754 |
aagaataagcaagagaaatggtacgagtaacatgttgagttgttctagcctcat |
34311701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University