View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_159 (Length: 300)

Name: NF8260A_low_159
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_159
NF8260A_low_159
[»] chr1 (11 HSPs)
chr1 (191-295)||(41181912-41182016)
chr1 (191-291)||(17707702-17707802)
chr1 (191-296)||(49969028-49969133)
chr1 (194-295)||(47107017-47107118)
chr1 (191-295)||(30111258-30111362)
chr1 (208-295)||(26720401-26720488)
chr1 (191-292)||(25591808-25591909)
chr1 (208-292)||(41061495-41061579)
chr1 (205-291)||(10711461-10711547)
chr1 (205-297)||(9903613-9903705)
chr1 (209-295)||(7397064-7397150)
[»] chr4 (19 HSPs)
chr4 (41-128)||(17459585-17459672)
chr4 (191-295)||(20395298-20395402)
chr4 (191-293)||(34322653-34322755)
chr4 (191-295)||(53487287-53487391)
chr4 (198-297)||(18106897-18106996)
chr4 (191-295)||(30274146-30274250)
chr4 (191-295)||(31863968-31864072)
chr4 (191-295)||(42777940-42778044)
chr4 (202-295)||(10563654-10563747)
chr4 (202-295)||(53779747-53779840)
chr4 (209-295)||(12881037-12881123)
chr4 (202-295)||(29213326-29213419)
chr4 (191-295)||(449753-449857)
chr4 (208-295)||(18935370-18935457)
chr4 (191-292)||(42823149-42823249)
chr4 (137-184)||(17451412-17451459)
chr4 (242-283)||(4525012-4525053)
chr4 (211-276)||(46639344-46639409)
chr4 (8-40)||(17459721-17459753)
[»] chr3 (16 HSPs)
chr3 (191-295)||(19221827-19221931)
chr3 (191-295)||(47536970-47537074)
chr3 (191-295)||(32093251-32093355)
chr3 (191-295)||(11639668-11639772)
chr3 (198-297)||(33121658-33121757)
chr3 (191-295)||(8695225-8695329)
chr3 (191-295)||(9047112-9047216)
chr3 (205-295)||(36635140-36635230)
chr3 (191-295)||(50543923-50544027)
chr3 (208-295)||(24124192-24124279)
chr3 (208-292)||(26845576-26845660)
chr3 (194-260)||(25341683-25341749)
chr3 (208-295)||(49500682-49500769)
chr3 (208-295)||(23818279-23818366)
chr3 (211-276)||(15484137-15484202)
chr3 (211-276)||(45683897-45683962)
[»] chr5 (7 HSPs)
chr5 (191-297)||(7001099-7001205)
chr5 (191-297)||(34874773-34874879)
chr5 (191-295)||(4416034-4416138)
chr5 (200-295)||(4922936-4923031)
chr5 (208-295)||(40090041-40090128)
chr5 (200-292)||(20209062-20209154)
chr5 (194-293)||(6048927-6049026)
[»] chr8 (6 HSPs)
chr8 (191-295)||(17658533-17658637)
chr8 (47-180)||(14379260-14379392)
chr8 (191-295)||(23679865-23679968)
chr8 (194-295)||(45256165-45256266)
chr8 (208-295)||(26031194-26031281)
chr8 (208-290)||(11155225-11155307)
[»] chr6 (7 HSPs)
chr6 (191-295)||(11061190-11061294)
chr6 (191-295)||(17079525-17079629)
chr6 (191-300)||(9199586-9199695)
chr6 (202-291)||(17874146-17874235)
chr6 (208-290)||(15311310-15311392)
chr6 (208-290)||(15316604-15316686)
chr6 (217-269)||(2365511-2365563)
[»] chr2 (5 HSPs)
chr2 (198-297)||(3000089-3000188)
chr2 (191-300)||(1379779-1379888)
chr2 (191-290)||(7075819-7075918)
chr2 (113-177)||(16634809-16634873)
chr2 (205-290)||(11026807-11026892)
[»] chr7 (6 HSPs)
chr7 (191-295)||(29113883-29113987)
chr7 (198-295)||(34231401-34231498)
chr7 (202-295)||(7459016-7459109)
chr7 (212-295)||(28060280-28060363)
chr7 (208-295)||(4076977-4077064)
chr7 (211-276)||(8771155-8771220)
[»] scaffold0007 (1 HSPs)
scaffold0007 (196-295)||(181831-181930)
[»] scaffold0308 (1 HSPs)
scaffold0308 (191-292)||(11783-11884)
[»] scaffold0179 (1 HSPs)
scaffold0179 (208-295)||(7230-7317)
[»] scaffold0014 (1 HSPs)
scaffold0014 (211-276)||(72057-72122)
[»] scaffold0189 (1 HSPs)
scaffold0189 (220-272)||(5813-5865)


Alignment Details
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 191 - 295
Target Start/End: Complemental strand, 41182016 - 41181912
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||    
T  41182016 aagctactagagactttcttcagcttatttggctcttgtgcgtttgggttttatggaacgaacgtaataacagacttttcaataatgttgtaacttctat 41181917  T
Q  291 tccca 295  Q
    |||||    
T  41181916 tccca 41181912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 191 - 291
Target Start/End: Complemental strand, 17707802 - 17707702
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||| |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||    
T  17707802 aagctattagagattttcttcagcttatttggctcttgtgcgtttgggttttatggaacgaacgtaataacagacttttcaataatgttgtaacttctat 17707703  T
Q  291 t 291  Q
    |    
T  17707702 t 17707702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 191 - 296
Target Start/End: Complemental strand, 49969133 - 49969028
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    ||||||||||||| |||||||||||||||||||| ||||| ||||| ||||| ||||||||| ||||||||||||| || ||||||||||||||||||||    
T  49969133 aagctactagagattttcttcagcttatttggctcttgtgtgtttgagttttatggaacgaacgtaataacagactttttaataatgttgtaacttctat 49969034  T
Q  291 tcccaa 296  Q
    ||||||    
T  49969033 tcccaa 49969028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 194 - 295
Target Start/End: Original strand, 47107017 - 47107118
Alignment:
Q  194 ctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattcc 293  Q
    |||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||| | ||| |||| |||||||||||||| ||| ||||||||||    
T  47107017 ctactagagattttcttcagcttatttggctcttgtgtgtttgggttttatggaacgaacgcaatgacaggctgttcaataatgtggtatcttctattcc 47107116  T
Q  294 ca 295  Q
    ||    
T  47107117 ca 47107118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 191 - 295
Target Start/End: Original strand, 30111258 - 30111362
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||  |||||||||  | || ||||| ||||||||||||||    
T  30111258 aagctactagagactttcttcagcttatttggctcttgtgcgtttgggtcttatggaacgaacataataacaggatttttaataaagttgtaacttctat 30111357  T
Q  291 tccca 295  Q
     ||||    
T  30111358 cccca 30111362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 208 - 295
Target Start/End: Complemental strand, 26720488 - 26720401
Alignment:
Q  208 cttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattccca 295  Q
    |||||||| |||||||||||||| ||||||||||| ||||| ||| ||||||||||||| |||||||||||||| |||||||||||||    
T  26720488 cttcagctgatttggcttttgtgtgtttgggttttatggaatgaacgtaataacagactcttcaataatgttgttacttctattccca 26720401  T

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Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 191 - 292
Target Start/End: Original strand, 25591808 - 25591909
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||| |||||||| ||||||||||||||||||||  | |||||||| ||||| ||||||||| ||||||||||  | |||||||||||||||||||||||    
T  25591808 aagcgactagagattttcttcagcttatttggctcgtatgcgtttgagttttatggaacgaacgtaataacagggttttcaataatgttgtaacttctat 25591907  T
Q  291 tc 292  Q
    ||    
T  25591908 tc 25591909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 41061495 - 41061579
Alignment:
Q  208 cttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattc 292  Q
    |||||||| ||||| |||||||| ||||||||||| ||||| ||| ||||||||||||| |||||||||||||| ||||||||||    
T  41061495 cttcagctgatttgacttttgtgtgtttgggttttatggaatgaacgtaataacagactcttcaataatgttgttacttctattc 41061579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 10711461 - 10711547
Alignment:
Q  205 tttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctatt 291  Q
    ||||||||| |||||||||| ||||||||||||| ||| |||||||||  |||||||||  | ||||||||||||||||||||||||    
T  10711461 tttcttcagtttatttggctcttgtgcgtttgggatttatggaacgaacataataacaggtttttcaataatgttgtaacttctatt 10711547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 9903613 - 9903705
Alignment:
Q  205 tttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattcccaag 297  Q
    ||||||||||| |||||||| ||||||||| | ||||| | ||||||| ||||||| ||  | ||||||||||||||||||||||||||||||    
T  9903613 tttcttcagctcatttggctcttgtgcgttagagttttatagaacgaacgtaataataggattttcaataatgttgtaacttctattcccaag 9903705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 7397064 - 7397150
Alignment:
Q  209 ttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattccca 295  Q
    ||||||| ||||||||  | || |||||||| || ||||| || |||||||| ||  |||| ||||||||||||||| |||||||||    
T  7397064 ttcagctcatttggctcctttgtgtttgggtcttatggaatgagtgtaataatagggtgtttaataatgttgtaactcctattccca 7397150  T

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Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 17459672 - 17459585
Alignment:
Q  41 tgatatcttttaggaatagcccttatgaattatggatagtctgatcagacgacattacttaaaatgctaaataattagtaatatttat 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17459672 tgatatcttttaggaatagcccttatgaattatggatagtctgatcagacgacattacttaaaatgctaaataattagtaatatttat 17459585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 191 - 295
Target Start/End: Complemental strand, 20395402 - 20395298
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| || || |||||||||||||||||||||||    
T  20395402 aagctactagagactttcttcagcttatttggctcttgtgcgtttgggttttatggaacgaacgtaataataggcttttcaataatgttgtaacttctat 20395303  T
Q  291 tccca 295  Q
    |||||    
T  20395302 tccca 20395298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 191 - 293
Target Start/End: Original strand, 34322653 - 34322755
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||| |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||    
T  34322653 aagctattagagattttcttcagcttatttggctcttgtgcgtttgggttttatggaacgaacgtaataacagacttttcaataatgttgtaacttctat 34322752  T
Q  291 tcc 293  Q
    |||    
T  34322753 tcc 34322755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 191 - 295
Target Start/End: Original strand, 53487287 - 53487391
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||| |||||||||| || |||||||||||||| ||||||||    
T  53487287 aagctactagagactttctccagcttatttggctcttgtgcgtttgggttttatggaatgaacgtaataacaggcttttcaataatgttgttacttctat 53487386  T
Q  291 tccca 295  Q
    |||||    
T  53487387 tccca 53487391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 198 - 297
Target Start/End: Original strand, 18106897 - 18106996
Alignment:
Q  198 tagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattcccaag 297  Q
    |||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||    
T  18106897 tagagattttcttcagcttatttggctattgtgcgtttgagttttatggaacgaacgtaacaacagacttttcaataatgttgtaacttctattcccaag 18106996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 191 - 295
Target Start/End: Original strand, 30274146 - 30274250
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||| |||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||  | |||||||||||||||||||||||    
T  30274146 aagctattagagatttttttcagcttatttggctcttgtgcgtttgggttttatggaacgaacgtaataacaggtttttcaataatgttgtaacttctat 30274245  T
Q  291 tccca 295  Q
    |||||    
T  30274246 tccca 30274250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 191 - 295
Target Start/End: Complemental strand, 31864072 - 31863968
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||||||| || |||||| ||||||||||  | |||||||||||||||||||||||    
T  31864072 aagctactagagactttcttcagcttatttggctcgtatgcgtttgggttttatgaaacgaacgtaataacagggttttcaataatgttgtaacttctat 31863973  T
Q  291 tccca 295  Q
    |||||    
T  31863972 tccca 31863968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 191 - 295
Target Start/End: Complemental strand, 42778044 - 42777940
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |  |  |||||||| ||||||| || || |||||||||||||||||||||||    
T  42778044 aagctactagagactttcttcagcttatttggcttttgtgcgtttggatggtacggaacgaacgtaataataggcttttcaataatgttgtaacttctat 42777945  T
Q  291 tccca 295  Q
    |||||    
T  42777944 tccca 42777940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 202 - 295
Target Start/End: Original strand, 10563654 - 10563747
Alignment:
Q  202 gactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattccca 295  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||| | |||||||| || ||||| ||||||||||||||||||||||    
T  10563654 gactttcttcagcttatttggcttttgtgtgtttgggttttatggaacgaacgcaataacaggcttttcaaaaatgttgtaacttctattccca 10563747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 202 - 295
Target Start/End: Complemental strand, 53779840 - 53779747
Alignment:
Q  202 gactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattccca 295  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||| | |||||||| || ||||| ||||||||||||||||||||||    
T  53779840 gactttcttcagcttatttggcttttgtgtgtttgggttttatggaacgaacgcaataacaggcttttcaaaaatgttgtaacttctattccca 53779747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 12881037 - 12881123
Alignment:
Q  209 ttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattccca 295  Q
    |||||||||||||||| |||| |||||||||||| ||||||||| |||||||||| || ||||||||||||||||||||||||||||    
T  12881037 ttcagcttatttggctcttgttcgtttgggttttatggaacgaacgtaataacaggcttttcaataatgttgtaacttctattccca 12881123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 202 - 295
Target Start/End: Original strand, 29213326 - 29213419
Alignment:
Q  202 gactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattccca 295  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | ||||||| ||| ||||| ||||||||||||||||||||||    
T  29213326 gactttcttcaacttatttggcttttgtgtgtttgggttttatggaacgaacgcaataacaaacttttcaaaaatgttgtaacttctattccca 29213419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 191 - 295
Target Start/End: Complemental strand, 449857 - 449753
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||| |||||| |||||||| ||||||||||| |||||||||| ||| || |||||||||  ||||||||| || |||||||||||||||||||||||    
T  449857 aagctattagagattttcttcaacttatttggctcttgtgcgtttaggtattatggaacgaacataataacaggcttttcaataatgttgtaacttctat 449758  T
Q  291 tccca 295  Q
    |||||    
T  449757 tccca 449753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 208 - 295
Target Start/End: Complemental strand, 18935457 - 18935370
Alignment:
Q  208 cttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattccca 295  Q
    |||||||||||||||||||||||| |||||||||| ||||| ||  ||||||||||||| || |||||||||||||||||||||||||    
T  18935457 cttcagcttatttggcttttgtgcatttgggttttatggaatgagcgtaataacagactctttaataatgttgtaacttctattccca 18935370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 292
Target Start/End: Complemental strand, 42823249 - 42823149
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||| |||| | ||||||||||| |||||||| ||||||||||| ||||| ||||||||| |||||||||  || ||||||||| |||||||||||||    
T  42823249 aagctattagaaattttcttcagctcatttggctcttgtgcgtttgagttttatggaacgaacgtaataacaagcttttcaataat-ttgtaacttctat 42823151  T
Q  291 tc 292  Q
    ||    
T  42823150 tc 42823149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 17451459 - 17451412
Alignment:
Q  137 aaagtgttaccttcttttagccacacatatattttatttgacgaaaac 184  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17451459 aaagtgttaccttcttttagccagacatatattttatttgacgaaaac 17451412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 4525012 - 4525053
Alignment:
Q  242 tgtggaacgaatgtaataacagactgttcaataatgttgtaa 283  Q
    ||||||||||||| |||||| ||||||| |||||||||||||    
T  4525012 tgtggaacgaatgcaataaccgactgtttaataatgttgtaa 4525053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 46639344 - 46639409
Alignment:
Q  211 cagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataat 276  Q
    |||||||||||||| ||||| | ||||||||||||||| ||| |||| ||| | || |||||||||    
T  46639344 cagcttatttggctgttgtgtgcttgggttttgtggaatgaacgtaacaaccgtcttttcaataat 46639409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 17459753 - 17459721
Alignment:
Q  8 cgaataatatgtggggttgagaccttaaaattg 40  Q
    ||||||| |||||||||||||||||||||||||    
T  17459753 cgaataaaatgtggggttgagaccttaaaattg 17459721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 191 - 295
Target Start/End: Complemental strand, 19221931 - 19221827
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||    
T  19221931 aagctactagagactttcttcagcttatttagctcttgtgcgtttgggttttatggaacgaacgtaataacagacttttcaataatgttgtaacttctat 19221832  T
Q  291 tccca 295  Q
    |||||    
T  19221831 tccca 19221827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 191 - 295
Target Start/End: Complemental strand, 47537074 - 47536970
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||    
T  47537074 aagctactagagactttcttcagcttatttggctcttgtgtgtttgggttttatggaacgaacgtaataacagacttttcaataatgttgtaacttctat 47536975  T
Q  291 tccca 295  Q
    |||||    
T  47536974 tccca 47536970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 191 - 295
Target Start/End: Original strand, 32093251 - 32093355
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| |||||||||| || |||||||||||||||||||||||    
T  32093251 aagctactagagactttcttcagcttatttggctcttgtgcgtttgagttttatggaacgaacgtaataacaggcttttcaataatgttgtaacttctat 32093350  T
Q  291 tccca 295  Q
    |||||    
T  32093351 tccca 32093355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 191 - 295
Target Start/End: Complemental strand, 11639772 - 11639668
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||   | |||||||||||||||||||||||    
T  11639772 aagctactagaaactttcttcagcttatttggctcttgtgcgtttgggttttatggaacgaacgtaataacaaggttttcaataatgttgtaacttctat 11639673  T
Q  291 tccca 295  Q
    |||||    
T  11639672 tccca 11639668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 198 - 297
Target Start/End: Original strand, 33121658 - 33121757
Alignment:
Q  198 tagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattcccaag 297  Q
    |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| |||| ||||| || ||||||||| ||||||||||||||||||||    
T  33121658 tagagattttcttcagcttatttggctattgtgcgtttgggttttatggaacgaacgtaacaacaggcttttcaataatattgtaacttctattcccaag 33121757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 191 - 295
Target Start/End: Original strand, 8695225 - 8695329
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    ||||||||||||||||||||||||||| |||||| || ||||||| |||||| ||||||||| |||||| |||  | ||||| |||||||||||||||||    
T  8695225 aagctactagagactttcttcagcttagttggctcttatgcgttttggttttatggaacgaacgtaatagcagggttttcaacaatgttgtaacttctat 8695324  T
Q  291 tccca 295  Q
    |||||    
T  8695325 tccca 8695329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 191 - 295
Target Start/End: Original strand, 9047112 - 9047216
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    ||||||||||||||||||||||||||| |||||| || ||||||| |||||| ||||||||| |||||| |||  | ||||| |||||||||||||||||    
T  9047112 aagctactagagactttcttcagcttagttggctcttatgcgttttggttttatggaacgaacgtaatagcagggttttcaacaatgttgtaacttctat 9047211  T
Q  291 tccca 295  Q
    |||||    
T  9047212 tccca 9047216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 205 - 295
Target Start/End: Complemental strand, 36635230 - 36635140
Alignment:
Q  205 tttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattccca 295  Q
    |||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||  || || |||||||||||||||||||||||||    
T  36635230 tttcttcagcttatttggctcttgtgcgtttgagttttatgaaacgaatgtaataacaagctttttaataatgttgtaacttctattccca 36635140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 191 - 295
Target Start/End: Complemental strand, 50544027 - 50543923
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||| ||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||  | |||||||||||||| ||||||||    
T  50544027 aagcaactcgagccttccttcagcttatttggcttttgtgcgtttgggttttatggaacgagtgtaataataggttcttcaataatgttgtcacttctat 50543928  T
Q  291 tccca 295  Q
     ||||    
T  50543927 gccca 50543923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 208 - 295
Target Start/End: Original strand, 24124192 - 24124279
Alignment:
Q  208 cttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattccca 295  Q
    |||||||||||||| |||||||||||||||||||| ||||| ||  ||||||||||||| || |||||||||||||||| ||||||||    
T  24124192 cttcagcttatttgacttttgtgcgtttgggttttatggaatgagcgtaataacagactctttaataatgttgtaacttatattccca 24124279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 26845660 - 26845576
Alignment:
Q  208 cttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattc 292  Q
    |||||||| |||||||||||||| || |||||||| ||||| ||| ||||||||||||| |||||||||||||| ||||||||||    
T  26845660 cttcagctgatttggcttttgtgtgtatgggttttatggaatgaacgtaataacagactcttcaataatgttgttacttctattc 26845576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 25341683 - 25341749
Alignment:
Q  194 ctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataa 260  Q
    |||||||||| ||||||||||||||||| || ||||| ||||||| ||| ||||||||||| |||||    
T  25341683 ctactagagattttcttcagcttatttgcctcttgtgtgtttgggctttatggaacgaatgcaataa 25341749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 295
Target Start/End: Original strand, 49500682 - 49500769
Alignment:
Q  208 cttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattccca 295  Q
    ||||||||||||||||| |||||||||||||| || ||||| ||  | ||||| ||  | |||||||||||||||||  |||||||||    
T  49500682 cttcagcttatttggctattgtgcgtttgggtcttatggaatgagcgcaataataggtttttcaataatgttgtaacccctattccca 49500769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 295
Target Start/End: Complemental strand, 23818366 - 23818279
Alignment:
Q  208 cttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattccca 295  Q
    ||||||||||||||||| |||||||||||||| || ||||| ||  | ||||| ||  | ||||||||||||| |||  |||||||||    
T  23818366 cttcagcttatttggctattgtgcgtttgggtcttatggaatgagcgcaataataggtttttcaataatgttgcaacccctattccca 23818279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 15484137 - 15484202
Alignment:
Q  211 cagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataat 276  Q
    ||||||||||||||||||||   ||||||| ||||||| ||| |||| ||| || |||||||||||    
T  15484137 cagcttatttggcttttgtgttcttgggttgtgtggaatgaacgtaacaaccgattgttcaataat 15484202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 45683962 - 45683897
Alignment:
Q  211 cagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataat 276  Q
    |||||||||||||| ||||| | ||||||||||||||| ||| |||| ||| | || |||||||||    
T  45683962 cagcttatttggctgttgtgtgcttgggttttgtggaatgaacgtaacaaccgtcttttcaataat 45683897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 191 - 297
Target Start/End: Original strand, 7001099 - 7001205
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||||| || |||||||||||||||||||||||    
T  7001099 aagctactagagactttcttcaacttatttggctcttgtgcgtttgggttttatggaacgaacgtaataacaggcttttcaataatgttgtaacttctat 7001198  T
Q  291 tcccaag 297  Q
    |||||||    
T  7001199 tcccaag 7001205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 191 - 297
Target Start/End: Original strand, 34874773 - 34874879
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |||||||||  |  |||||||||||||||||||||||    
T  34874773 aagctactagagactttcttcagcttatttggctcttgtgcgtttgggttttatggaatgaacgtaataacaagcctttcaataatgttgtaacttctat 34874872  T
Q  291 tcccaag 297  Q
    || ||||    
T  34874873 tctcaag 34874879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 191 - 295
Target Start/End: Original strand, 4416034 - 4416138
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||| |||||| |||||||| ||||||||||| ||||||||||||||||| ||||||| | |||||||||| || |||||||||||||||||||||||    
T  4416034 aagctattagagattttcttcaacttatttggctcttgtgcgtttgggttttatggaacgtacgtaataacaggcttttcaataatgttgtaacttctat 4416133  T
Q  291 tccca 295  Q
    |||||    
T  4416134 tccca 4416138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 200 - 295
Target Start/End: Complemental strand, 4923031 - 4922936
Alignment:
Q  200 gagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattccca 295  Q
    ||||||| |||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||| || ||||||||||||||||||||||||||||    
T  4923031 gagacttccttcagctgatttggcttttgtgtgtttgggttttatggaacgaacgtaataacaggctcttcaataatgttgtaacttctattccca 4922936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 208 - 295
Target Start/End: Complemental strand, 40090128 - 40090041
Alignment:
Q  208 cttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattccca 295  Q
    ||||||||||||||||||||||||  ||||||| | ||||||||  |||||||||| || ||||||||||||||||||||||||||||    
T  40090128 cttcagcttatttggcttttgtgctgttgggttctatggaacgagcgtaataacaggcttttcaataatgttgtaacttctattccca 40090041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 292
Target Start/End: Original strand, 20209062 - 20209154
Alignment:
Q  200 gagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattc 292  Q
    |||| ||| ||||||| |||||||||||||| ||||||||||| ||||| |||  |||||||||||| |||||||||||||| ||||||||||    
T  20209062 gagattttgttcagctgatttggcttttgtgtgtttgggttttatggaatgaacctaataacagactcttcaataatgttgttacttctattc 20209154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 194 - 293
Target Start/End: Complemental strand, 6049026 - 6048927
Alignment:
Q  194 ctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattcc 293  Q
    |||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||| ||| | ||| | ||  ||||||||||||| ||||||||||||||    
T  6049026 ctactagagattttcttcagcttatttggctcttgtgtgtttgggttttatggaatgaacgcaatgataggatgttcaataatgtggtaacttctattcc 6048927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 9e-36; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 191 - 295
Target Start/End: Complemental strand, 17658637 - 17658533
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| || ||||||| |||||||||| ||||    
T  17658637 aagctactagagactttcttcagcttatttggctattgtgcgtttgggttttatggaacgaacgtaataacaggcttttcaatattgttgtaactcctat 17658538  T
Q  291 tccca 295  Q
    |||||    
T  17658537 tccca 17658533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 47 - 180
Target Start/End: Complemental strand, 14379392 - 14379260
Alignment:
Q  47 cttttaggaatagcccttatgaattatggatagtctgatcagacgacattacttaaaatgctaaataatt-agtaatatttatgaaacactaaagtgtta 145  Q
    ||||||| ||||||| ||||||| ||||| ||||| || ||||| | ||||||||||||||||||||||| | |||||||||||||||||| ||| ||||    
T  14379392 cttttagaaatagcctttatgaactatgggtagtccgaccagacaatattacttaaaatgctaaataatttactaatatttatgaaacactgaagcgtta 14379293  T
Q  146 ccttcttttagccacacatatattttatttgacga 180  Q
    |||||||||||||||||  ||||||||||||||||    
T  14379292 ccttcttttagccacac--atattttatttgacga 14379260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 191 - 295
Target Start/End: Complemental strand, 23679968 - 23679865
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||||||||||||||||| ||||| |||| || ||||||||||| ||||| || |||||| ||||||||| ||| |||||||||||||||||||||||    
T  23679968 aagctactagagactttctttagcttttttg-ctcttgtgcgtttgagttttatgaaacgaacgtaataacaaacttttcaataatgttgtaacttctat 23679870  T
Q  291 tccca 295  Q
    |||||    
T  23679869 tccca 23679865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 194 - 295
Target Start/End: Original strand, 45256165 - 45256266
Alignment:
Q  194 ctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattcc 293  Q
    |||||||||| ||| |||||||||||||||| ||||| ||||||||||| |||||||||   ||| ||||  ||||||||||||| ||||||||||||||    
T  45256165 ctactagagatttttttcagcttatttggctcttgtgtgtttgggttttatggaacgaacacaatgacaggttgttcaataatgtggtaacttctattcc 45256264  T
Q  294 ca 295  Q
    ||    
T  45256265 ca 45256266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 295
Target Start/End: Complemental strand, 26031281 - 26031194
Alignment:
Q  208 cttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattccca 295  Q
    |||||||| ||||| |||||||| ||||| ||||| ||||| ||| ||||||||||||| || ||||||||||| |||||||||||||    
T  26031281 cttcagctgatttgacttttgtgtgtttgagttttatggaatgaacgtaataacagactctttaataatgttgttacttctattccca 26031194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 11155307 - 11155225
Alignment:
Q  208 cttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    ||||| ||||||||||| |||||||| ||||| || ||||| ||  | ||||| || || |||||||||||||||||| ||||    
T  11155307 cttcaacttatttggctattgtgcgtgtgggtcttatggaatgagcgcaataataggcttttcaataatgttgtaactcctat 11155225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 191 - 295
Target Start/End: Original strand, 11061190 - 11061294
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||| |||||||||| || |||||||||||||||||| ||||    
T  11061190 aagctactagagactttcttcagcttatttggctattgtgcgtttggattttatggaacgaacgtaataacaggcttttcaataatgttgtaactcctat 11061289  T
Q  291 tccca 295  Q
    |||||    
T  11061290 tccca 11061294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 191 - 295
Target Start/End: Original strand, 17079525 - 17079629
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| |||||| ||||| ||| |||||||||| || |||||||||||||||||||||||    
T  17079525 aagctactagagactttcctcagcttatttggctcttgtgcgtttaggttttatggaatgaacgtaataacaggcttttcaataatgttgtaacttctat 17079624  T
Q  291 tccca 295  Q
    |||||    
T  17079625 tccca 17079629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 191 - 300
Target Start/End: Original strand, 9199586 - 9199695
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||  |||| ||||||||| |||||||||| || |||||||||||| ||||||||||    
T  9199586 aagctactagagactttcttcagtttatttggctttcgtgcgtttgaattttatggaacgaacgtaataacaggcttttcaataatgttttaacttctat 9199685  T
Q  291 tcccaagctg 300  Q
    ||||| ||||    
T  9199686 tcccaggctg 9199695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 17874146 - 17874235
Alignment:
Q  202 gactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctatt 291  Q
    ||||||||||||||||||||||||||||| |||||| |||| ||||||||| | |||||||| |||||||| |||||||| |||||||||    
T  17874146 gactttcttcagcttatttggcttttgtgtgtttggattttatggaacgaacgcaataacaggctgttcaaaaatgttgtcacttctatt 17874235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 15311392 - 15311310
Alignment:
Q  208 cttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||||||||||||||| | || | ||| ||||| ||||| || |||||||| || ||||| ||||||| ||||||| ||||    
T  15311392 cttcagcttatttggcttctctgtgcttgagttttatggaatgagtgtaataataggctgtttaataatggtgtaactcctat 15311310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 15316686 - 15316604
Alignment:
Q  208 cttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||||||||||||||| | || | ||| ||||| ||||| || |||||||| || ||||| ||||||| ||||||| ||||    
T  15316686 cttcagcttatttggcttctctgtgcttgagttttatggaatgagtgtaataataggctgtttaataatggtgtaactcctat 15316604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 2365511 - 2365563
Alignment:
Q  217 atttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgtt 269  Q
    |||||||||||||| |||| | |||||||||  |||| |||||||||||||||    
T  2365511 atttggcttttgtgtgtttagattttgtggactgaatttaataacagactgtt 2365563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 198 - 297
Target Start/End: Original strand, 3000089 - 3000188
Alignment:
Q  198 tagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattcccaag 297  Q
    |||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||    
T  3000089 tagagattttcttcagcttatttggctattgtgcgtttgagttttatggaacgaacgtaacaacagacttttcaataatgttgtaacttctattcccaag 3000188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 191 - 300
Target Start/End: Complemental strand, 1379888 - 1379779
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||  |||||| ||  | |||||||||||||||||||||||    
T  1379888 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggtggtatggaacgaacataataataggtttttcaataatgttgtaacttctat 1379789  T
Q  291 tcccaagctg 300  Q
    ||||| ||||    
T  1379788 tcccaggctg 1379779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 191 - 290
Target Start/End: Complemental strand, 7075918 - 7075819
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||| |||||| |||||||||||||||||||| |||||||||||| |||| |||||| || |||||||||  || |||||||||||||||||||||||    
T  7075918 aagctattagagattttcttcagcttatttggctcttgtgcgtttggattttatggaacaaacgtaataacaagcttttcaataatgttgtaacttctat 7075819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 16634873 - 16634809
Alignment:
Q  113 aattagtaatatttatgaaacactaaagtgttaccttcttttagccacacatatattttatttga 177  Q
    ||||| ||||||||||||| |||||||   |||||||  ||||||||||||||||||||||||||    
T  16634873 aattactaatatttatgaagcactaaaactttacctttatttagccacacatatattttatttga 16634809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 11026892 - 11026807
Alignment:
Q  205 tttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    |||||||||||||||||||| |||| ||| ||||| || ||||| ||    ||||| || || |||||||||||||||||| ||||    
T  11026892 tttcttcagcttatttggctattgttcgtgtgggtcttatggaatgatcacaataataggcttttcaataatgttgtaactcctat 11026807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 191 - 295
Target Start/End: Original strand, 29113883 - 29113987
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    ||||| ||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||| || |||||||||||||||||||| ||    
T  29113883 aagctgctagagattttcttcagcttatttggctcttgtgtgtttgggttttatggaacgaacgtaataacaggcttttcaataatgttgtaacttcaat 29113982  T
Q  291 tccca 295  Q
    |||||    
T  29113983 tccca 29113987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 198 - 295
Target Start/End: Complemental strand, 34231498 - 34231401
Alignment:
Q  198 tagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattccca 295  Q
    |||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||| |||||||||| || |||||||||||||||||||| |||||||    
T  34231498 tagagattttcttcagcttatttggctcttgtgcgtttgagttttatggaacgaacgtaataacaggcttttcaataatgttgtaacttcaattccca 34231401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 202 - 295
Target Start/End: Original strand, 7459016 - 7459109
Alignment:
Q  202 gactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattccca 295  Q
    ||||||||||||||||||||||||||||| || || ||||| ||||||||| | |||||||| || ||||| ||||||||||||||||||||||    
T  7459016 gactttcttcagcttatttggcttttgtgtgtgtgagttttatggaacgaacgcaataacaggcttttcaaaaatgttgtaacttctattccca 7459109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 28060363 - 28060280
Alignment:
Q  212 agcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattccca 295  Q
    |||||||||||||||||||||||||  |||| ||||||||| ||||||||||||| ||||| ||| ||||||||||||||||||    
T  28060363 agcttatttggcttttgtgcgtttgaattttatggaacgaacgtaataacagactcttcaacaatattgtaacttctattccca 28060280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 295
Target Start/End: Complemental strand, 4077064 - 4076977
Alignment:
Q  208 cttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattccca 295  Q
    ||||||||||||||||| ||||| ||||||||||| ||||| ||  |||||||||| || || || ||||||||||||||||||||||    
T  4077064 cttcagcttatttggctgttgtgtgtttgggttttatggaatgagcgtaataacaggctctttaaaaatgttgtaacttctattccca 4076977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 8771220 - 8771155
Alignment:
Q  211 cagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataat 276  Q
    |||||||||||||| ||||| | ||||||||||||||| ||| |||| ||| | || |||||||||    
T  8771220 cagcttatttggctgttgtgtgcttgggttttgtggaatgaacgtaacaaccgtcttttcaataat 8771155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 196 - 295
Target Start/End: Complemental strand, 181930 - 181831
Alignment:
Q  196 actagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattccca 295  Q
    |||||||||||||||||||||||||||||  | |||||||||||||| ||||||||| ||||||||||  | ||||||||||||||||||||||||||||    
T  181930 actagagactttcttcagcttatttggctcgtatgcgtttgggttttatggaacgaacgtaataacagggttttcaataatgttgtaacttctattccca 181831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 191 - 292
Target Start/End: Complemental strand, 11884 - 11783
Alignment:
Q  191 aagctactagagactttcttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctat 290  Q
    ||||||||||||||||| |||||||||||| ||| ||||||||||||||||| ||||||||| |||||||||  || ||||||||||||||||||| |||    
T  11884 aagctactagagactttgttcagcttatttagctcttgtgcgtttgggttttatggaacgaacgtaataacatgcttttcaataatgttgtaacttttat 11785  T
Q  291 tc 292  Q
    ||    
T  11784 tc 11783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 208 - 295
Target Start/End: Complemental strand, 7317 - 7230
Alignment:
Q  208 cttcagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataatgttgtaacttctattccca 295  Q
    |||||||| |||||||||||||| ||||||||||| ||||| ||| ||||||||||||| |||||||||||||| |||||||||||||    
T  7317 cttcagctgatttggcttttgtgtgtttgggttttatggaatgaacgtaataacagactcttcaataatgttgttacttctattccca 7230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 72057 - 72122
Alignment:
Q  211 cagcttatttggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaataat 276  Q
    ||||||||||||||||||||   |||||| |||||||| ||| |||| ||| |||| |||||||||    
T  72057 cagcttatttggcttttgtgttcttgggtattgtggaatgaacgtaacaaccgactattcaataat 72122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 5865 - 5813
Alignment:
Q  220 tggcttttgtgcgtttgggttttgtggaacgaatgtaataacagactgttcaa 272  Q
    ||||||||||| |||||| | |||||||| ||||| || ||||||||||||||    
T  5865 tggcttttgtgtgtttggttgttgtggaatgaatgaaacaacagactgttcaa 5813  T

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