View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_16 (Length: 483)
Name: NF8260A_low_16
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 9 - 483
Target Start/End: Complemental strand, 47886463 - 47885990
Alignment:
| Q |
9 |
tggtgttgacttaatggttgctggacttcaaatttttcctgtcgataggctggcaaggtttagatatttatgcgagcagacagacaaggtaacatgataa |
108 |
Q |
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| T |
47886463 |
tggtgttgacttaatggttgctggacttcaaatttttcctgtcgataggctggcaaggtttagatatttatgcgagcagacagagaaggtaacatgataa |
47886364 |
T |
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| Q |
109 |
aatctatgtttattctatgacattaatggagatgcaccgttagtataatttagttttacaccgtcattcaatgagaactcatggcactgcaacataagtg |
208 |
Q |
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| T |
47886363 |
aatctatgtttattctatgacattaatggagatgcaccgttagtataatttagttttacaccgtcattcaatgagaactcatggcactgcaacataagcg |
47886264 |
T |
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| Q |
209 |
ttattttgctactgccattaaaaaataatcgcaaattattgaattttcattggacgttggtgtaaactagtttacattgattatgattgtcccttttctc |
308 |
Q |
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| T |
47886263 |
ttattttgctactgccattaaaaaataatcgcaaattattgaattttcatcggacgttggtgtaaactagtttacatcgattatgattgtcccttttctc |
47886164 |
T |
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| Q |
309 |
ttattatattatcatacacaattcnnnnnnngaaaaaatatatcatacacagttctaaagttaaatatctcttattttttggttacaagttaaatatctc |
408 |
Q |
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| T |
47886163 |
ttattata-tatcatacacaattctttttttgaaaaaatatatcatacacagttctaaagttaaatatctcttattttttggttacaagttaaatatctc |
47886065 |
T |
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| Q |
409 |
ttatatatgaacataatattttacattgtaactttttgtctgtttctcatttctaacatttgtgacttgatgctc |
483 |
Q |
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| T |
47886064 |
ttatatatgaacataatattttacattgtaactttttgtctgtttctcatttcaaacatttgtgacttgatgctc |
47885990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 4622770 - 4622864
Alignment:
| Q |
9 |
tggtgttgacttaatggttgctggacttcaaatttttcctgtcgataggctggcaaggtttagatatttatgcgagcagacagacaaggtaacat |
103 |
Q |
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|||||| |||||||||||||| |||||||||||||| ||||| ||||| | ||||| |||||||||||| ||||||||||||||| |||| |
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| T |
4622770 |
tggtgtagacttaatggttgccggacttcaaattttccctgttgatagacatgcaagatttagatatttaaagatgcagacagacaaggtgacat |
4622864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 18359388 - 18359356
Alignment:
| Q |
158 |
ttagttttacaccgtcattcaatgagaactcat |
190 |
Q |
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| T |
18359388 |
ttagttttacaccgacattcaatgagaactcat |
18359356 |
T |
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