View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8260A_low_164 (Length: 298)
Name: NF8260A_low_164
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_164 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 22659717 - 22659782
Alignment:
| Q |
6 |
gtatggtgttcttccttgattttttcaagtaaatttgattccatcttttctgcatttagcttgtac |
71 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22659717 |
gtatggtgttcttcctcgattttttcaagtaaatttgattccatcttttctgcatttagcttgtac |
22659782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 165 - 291
Target Start/End: Original strand, 22659883 - 22660005
Alignment:
| Q |
165 |
tagagaatattttgtttgttatttgtcggtcaaagggtaaaggctactaaagccctcacattaggcctacaaacnnnnnnnnnnnngtatttttcattaa |
264 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
22659883 |
tagaggatattttttttgttatttgtcggtcaaagggt-aaggctattaaagccgtcacattaggcctacaaac---aaaaaaaaagtatttttcattaa |
22659978 |
T |
|
| Q |
265 |
attttatgagaaaaatggtattctatg |
291 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
22659979 |
attttatgagaaaaatggtattttatg |
22660005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 28967870 - 28967923
Alignment:
| Q |
9 |
tggtgttcttccttgattttttcaagtaaatttgattccatcttttctgcattt |
62 |
Q |
| |
|
||||||||||||| |||| |||||||||| |||||| ||| |||||||||||| |
|
|
| T |
28967870 |
tggtgttcttcctatatttcttcaagtaaacttgatttcattttttctgcattt |
28967923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University