View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_170 (Length: 295)
Name: NF8260A_low_170
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_170 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 6 - 285
Target Start/End: Original strand, 53513541 - 53513820
Alignment:
| Q |
6 |
acattcaacattaagaaaatatatagttggatccaactgattaatcaattgattgtttttaatagagcatatatgcagattttagggttgaaccatttac |
105 |
Q |
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| T |
53513541 |
acattcaacattaagaaaatatatatttggatccaactgattaatctattgattgtttttaatagagtatatatgcatattttagggttgaaccatttac |
53513640 |
T |
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| Q |
106 |
agtttttaatagtttctaaccgtgtaaactagaagtatctagtgtgccatctggcttcatgctccaaaacagcagagcgtcgcccatttttggtttcact |
205 |
Q |
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| T |
53513641 |
agtttttaataatttctaaccgtgtaaactagaagtatctagtgtgccatctggcttcatgctccaaaacagcagagcgtcgcccatttttggtttcact |
53513740 |
T |
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| Q |
206 |
gatagaccatctccagaacatttggatacagaagtaaagttgggcttagcatcaggaaatacagtctcaccaccttcttc |
285 |
Q |
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| T |
53513741 |
gatagaccatctccagaacatttggatacagaagtaaagttgggctgagcatcaggaaatacagtctcaccaccttcttc |
53513820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 35 - 285
Target Start/End: Original strand, 53509961 - 53510211
Alignment:
| Q |
35 |
gatccaactgattaatcaattgattgtttttaatagagcatatatgcagattttagggttgaaccatttacagtttttaatagtttctaaccgtgtaaac |
134 |
Q |
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| T |
53509961 |
gatccaactcattaatctatagattgtgtttaatagagaatgtatacatattttacagttgaacgagttgcggtttttaatagattctaaccgtgtaaac |
53510060 |
T |
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| Q |
135 |
tagaagtatctagtgtgccatctggcttcatgctccaaaacagcagagcgtcgcccatttttggtttcactgatagaccatctccagaacatttggatac |
234 |
Q |
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| T |
53510061 |
tagaagtatcaagtgtgccatctggcttcatgctccgaaacagcagagcatcacccatttttggtttcactgatagacccttttcaggatatttggatac |
53510160 |
T |
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| Q |
235 |
agaagtaaagttgggcttagcatcaggaaatacagtctcaccaccttcttc |
285 |
Q |
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| T |
53510161 |
agaatttatgttaggcttagcattaggaaatacagtctcaccaccttcttc |
53510211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 116 - 285
Target Start/End: Original strand, 53523948 - 53524120
Alignment:
| Q |
116 |
agtttctaaccgtgtaaactagaagtatctagtgtgccatctggcttcatgctccaaaacagcagagcgtcgcccatttttggtttcactgatagaccat |
215 |
Q |
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| T |
53523948 |
agtttctaaccatgtaagctagctgtatctagtgagccatctggcttaacgctccaaaacagcagagcatcgcccattttcggtttcactactaaaccct |
53524047 |
T |
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| Q |
216 |
ctccag---aacatttggatacagaagtaaagttgggcttagcatcaggaaatacagtctcaccaccttcttc |
285 |
Q |
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| T |
53524048 |
ttccaggatgatatttggatacagaattaaagttgggcttagcattaggaaatacagtctcaccaccttcttc |
53524120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 213
Target Start/End: Original strand, 53547540 - 53547659
Alignment:
| Q |
94 |
tgaaccatttacagtttttaatagtttctaaccgtgtaaactagaagtatctagtgtgccatctggcttcatgctccaaaacagcagagcgtcgcccatt |
193 |
Q |
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| T |
53547540 |
tgaaccagttaaagtatttaatagtccctaaccgtgtaaactggatgcatctagtgtggcatctggcctcatgctccaaaacagcagagcatcacccatt |
53547639 |
T |
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| Q |
194 |
tttggtttcactgatagacc |
213 |
Q |
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| T |
53547640 |
tttggtttcagtgatagacc |
53547659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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