View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_171 (Length: 294)
Name: NF8260A_low_171
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_171 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 26 - 288
Target Start/End: Complemental strand, 12274411 - 12274144
Alignment:
| Q |
26 |
acatccccggacgcacgagaagtatgaagggtggg--tgggaaaagaaaatctttaaaattaaagtgaagccgttaacggtccatctaaatccgggtacc |
123 |
Q |
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| T |
12274411 |
acatccccggacgcacgagaagtatgaagggtgggggtgggaaaagaaaatctttaaaattaaagtaaagccgttaacggtccatctaaatccgggtacc |
12274312 |
T |
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| Q |
124 |
catctcgtagaaaatagaaaacgg--ttttatttattnnnnnnngaaagtagaaaacacggaaaaggacttgaacattctatgcaggcggttgacaatag |
221 |
Q |
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| T |
12274311 |
catctcttagaaaatagaaaacggtattttatttattaaaaaaagaaagtagaaaacacggaaaaggacttgaacattctatgcaggcggttgacaatag |
12274212 |
T |
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| Q |
222 |
tct-ccaaaagtcctagttacaccaaccatcgcttctttcgctcaaatgttcctctgttaacacgaaa |
288 |
Q |
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| T |
12274211 |
tctcccaaaagtcctagttacaccaaccatcgcttctttcgctcaaatgttcctctgttaacacgaaa |
12274144 |
T |
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