View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_172 (Length: 292)
Name: NF8260A_low_172
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_172 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 291
Target Start/End: Original strand, 27909722 - 27910003
Alignment:
| Q |
7 |
tcaaagagataaatattgttctcatatattgaatggttgattaaaaagattgtaaataagcatataaaatattttatttatagagcttgtgagaaattac |
106 |
Q |
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| T |
27909722 |
tcaaagagataaatattgttctcatatattgaatggttgattaaaaagattgtaaataagcatataaaatattttatttatagagcttgtgagaaattaa |
27909821 |
T |
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| Q |
107 |
caaacctaattaaatgaataaaactttaactagctttatatttctagtagccccacaaactcttcttaacttgagtttggattacaataataatagacca |
206 |
Q |
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| T |
27909822 |
caaacctaattaaatgaacaaaactttaactagctttatatttctaatagccccacaaactcttcttaacttgagtttggattac---aataatagacca |
27909918 |
T |
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| Q |
207 |
aaattcaaaacagaaaaacaagtaacaaggtccaaagagaaaaatctaacaactcggtggagaattattttcgctgttaaataga |
291 |
Q |
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| T |
27909919 |
aaattcaaaacagaaaaacaagtaacaaggtccaaagagaaaaatctaacaactcagtggaaaattattgtcgctgttaaataga |
27910003 |
T |
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