View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_18 (Length: 478)
Name: NF8260A_low_18
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 21 - 462
Target Start/End: Original strand, 7322118 - 7322560
Alignment:
| Q |
21 |
gttaaaacactattaacccttgtttctttctaggaataggaaaatgttagatattaataacaataatttctaagtttgaatcttggacctccttgttata |
120 |
Q |
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| T |
7322118 |
gttaaaacactattaacccttgtttctttctaggaataggaaaatgttagatattaataacaataatttctaagtttgaatcttggacctccttgttata |
7322217 |
T |
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| Q |
121 |
actctttcaacatcctttagccaactaactgagcttcattgtattaaaatactgtcatattggatgtatgtttgatgtagaggccacttatataggaacc |
220 |
Q |
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| T |
7322218 |
actctttcaacatcctttagccaactaactgagcttcattgtattaaaatactgtcatattggatgtatgtttgatgtagaggccacttatataggaacc |
7322317 |
T |
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| Q |
221 |
aataaccactttagctctcaagtaaaagcgctccttcagaatattatggtcttagaaacataaggcgtgtttgatctgttaaaaaattaaggactggata |
320 |
Q |
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| T |
7322318 |
caaaaccactttagctctcaagtaaaagcgctccttcagaatattatggtcttagaaacataaggtgtgtttgatctgttaaaaaattaaggattggata |
7322417 |
T |
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| Q |
321 |
gcataactctagtttgtgttgtgcttgattttaaatttgttcctaggacttgacaaatt-ggggcatgcatgcaagggataggtcaaaaactgaaattct |
419 |
Q |
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| T |
7322418 |
ggataactctaatttgtgttgtgcttgattttaaatttgttcctgggatttgacaaattgggggcatgcatgcaagggataggtcaaaaactgaaattct |
7322517 |
T |
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| Q |
420 |
tatccctcactaccacaacacaactttttgttacaaataacat |
462 |
Q |
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| T |
7322518 |
tatccctcactaccacaacacaactttttgttacaaataacat |
7322560 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 451
Target Start/End: Complemental strand, 48699498 - 48699449
Alignment:
| Q |
404 |
caaaaactgaaattcttatccctcact--accacaacacaactttttgtt |
451 |
Q |
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| T |
48699498 |
caaaaactgaaattcttgtccctcactaaaccacaacacaactatttgtt |
48699449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 450
Target Start/End: Original strand, 6029357 - 6029418
Alignment:
| Q |
391 |
gcaagggataggtcaaaaactgaaattcttatccctcac--taccacaacacaactttttgt |
450 |
Q |
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| T |
6029357 |
gcaagggacaggacaaaaactgaaatttttgtccctcaccaaaccacaacacaactttttgt |
6029418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 431
Target Start/End: Original strand, 35472981 - 35473021
Alignment:
| Q |
391 |
gcaagggataggtcaaaaactgaaattcttatccctcacta |
431 |
Q |
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| T |
35472981 |
gcaagggacaagtcaaaaactgaaattcttattcctcacta |
35473021 |
T |
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