View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_180 (Length: 288)
Name: NF8260A_low_180
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_180 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 27913152 - 27912976
Alignment:
| Q |
18 |
cttaatgtgatgaaaaagtttaagccaagatgaagaacactcgtttgtatctctgcatcaaagcatcatcattccaagaatttatagaggaggattgtgc |
117 |
Q |
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| T |
27913152 |
cttaatgtgatgaaaaagtttaagccaagatgaagaacactcgtttgtatctctgcatcaaagcatcatcattccaagaatttatagaggaggattgtgc |
27913053 |
T |
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| Q |
118 |
tttagagatagcaatgacgggccatgttcttcaacaatgacggtggtcatcaccaccaatgacggcaccatcttctt |
194 |
Q |
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| T |
27913052 |
tttagagatagcaatgacgggccatgttcttcaacaatgacggtggtcatcaccaccaatgacggcgccatcttctt |
27912976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 190 - 273
Target Start/End: Complemental strand, 27910134 - 27910051
Alignment:
| Q |
190 |
ttcttcaacaagatcgacatcgtccaactcacgaagtcgttctggaagatttcatgtgtatcaagagcttcagtttccttcaat |
273 |
Q |
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| T |
27910134 |
ttcttcaacaagatcgacatcgtccaactcacgaaggcgttccggaagatttcatgtgtaccaagagcttcagtttcctacaat |
27910051 |
T |
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