View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_187 (Length: 287)
Name: NF8260A_low_187
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_187 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 26734597 - 26734318
Alignment:
| Q |
1 |
agagagaaaatatttgtcccataaccataacttagtcgacagggacattgtattttatatgtaggacgtgttcaaatctaaattctccacttattcannn |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||| | || ||||||||||||| |||||||||||||||||||| | ||||||| |||||||| |
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| T |
26734597 |
agagagaaaatatttgtcccatgaccataacttagttggtagaaacattgtattttacatgtaggacgtgttcaaatccagattctcctcttattcattt |
26734498 |
T |
|
| Q |
101 |
nnnnnctcaacgacaaattttatttattagcatcgacacaagacgtgacaagaactatataatacaacattggaaaaaacacccagaggccaaaaaggag |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26734497 |
tttttttcaacgacaaattttatttattagcatcgacagaagacgtgacaagaactatataatacaacattggaaaaaacacccagaggccaaaaaggag |
26734398 |
T |
|
| Q |
201 |
gcgcatccataaacagctaaacaacctaaaaggtactcactatactaatcaccaccacagtaacattatcccttacacag |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
26734397 |
gcgcatccataaacagctaaacaacctaaaaggtactcactatactaatcaccaccataataacattatcccttacacag |
26734318 |
T |
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