View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_189 (Length: 284)
Name: NF8260A_low_189
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_189 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 41311286 - 41311027
Alignment:
| Q |
1 |
agctttaatggtggtcgcagagtagggtcgttcttgaatggttctagtcattggctgatttatgatgataagactgaaatggatgttattattgcctttg |
100 |
Q |
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|||| ||||||||||| |||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311286 |
agctctaatggtggtcccagagttgggtcgttcttgaatggttctattcattggctggtttatgatgataagactgaaatggatgttattattgcctttg |
41311187 |
T |
|
| Q |
101 |
atttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311186 |
atttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttat |
41311087 |
T |
|
| Q |
201 |
tagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatacacaat |
260 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41311086 |
tagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatacgcaat |
41311027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 43164947 - 43164710
Alignment:
| Q |
18 |
cagagtagggtcgttcttgaatggttctagtcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgaca |
117 |
Q |
| |
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|||||| |||||||||||||||||||||| |||||||||| ||||| || || |||||||||| |||||||||||||||| |||||||||||||| |||| |
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| T |
43164947 |
cagagtcgggtcgttcttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattgcctatgatttaaaggaaaagaca |
43164848 |
T |
|
| Q |
118 |
ctgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatgg |
217 |
Q |
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| T |
43164847 |
atgtcagagattgctcttccagatgatttttatagtgatttttctcccaacctttatgatttgttggtacttcgcggacttatcagcgtatggaatatgg |
43164748 |
T |
|
| Q |
218 |
agatgcctacacttaagatatgggtgatgcaagaatac |
255 |
Q |
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||||| ||||||||||||||||||| |||||||||||| |
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| T |
43164747 |
agatgtctacacttaagatatgggtaatgcaagaatac |
43164710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 255
Target Start/End: Original strand, 30165650 - 30165883
Alignment:
| Q |
10 |
ggtggtcgcagagtagggtcgttcttgaatggttctagtcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaagg |
109 |
Q |
| |
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||||||| |||||| ||||||||||| |||||||||| |||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||| |
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| T |
30165650 |
ggtggtcccagagttgggtcgttcttcaatggttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgatttaaagg |
30165749 |
T |
|
| Q |
110 |
aaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatg |
209 |
Q |
| |
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|| |||| || |||||| ||||| ||| ||| || || | ||| |||||||||||||| |||||||| ||||||| |||||||| |
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| T |
30165750 |
aagcgacaatggcagagatagctcttccaaatgattgttctcgtg------------gaatttatgatttgttggtatttcatggacttatcagtgtatg |
30165837 |
T |
|
| Q |
210 |
gaatatggagatgcctacacttaagatatgggtgatgcaagaatac |
255 |
Q |
| |
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|||| |||||| | ||||| |||||||||||||||||||||||||| |
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| T |
30165838 |
gaatgtggagaggtctacagttaagatatgggtgatgcaagaatac |
30165883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 30125223 - 30124981
Alignment:
| Q |
18 |
cagagtagggtcgttcttgaatggttctagtcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgaca |
117 |
Q |
| |
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|||||| |||| |||||||||||| ||| |||||||||| || || || || |||| | | |||||||||| |||||||||||||||||||| |||| |
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| T |
30125223 |
cagagttgggttgttcttgaatgggactattcattggctggttcataatcatgagaccaacaaggatgttattgttgcctttgatttaaaggaagcgaca |
30125124 |
T |
|
| Q |
118 |
ctgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatgg |
217 |
Q |
| |
|
||||||| | ||||| ||| ||| |||||||| ||||||||| || | |||||||||| | |||||||| ||||||| ||| |||||| | | | |
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| T |
30125123 |
atgtcagaaatagctcttccaaatgatttttataccgattactctcctgtagattatgatttgttagtatttggtggacttatcagtttatggattcttg |
30125024 |
T |
|
| Q |
218 |
agatgcctacacttaagatatgggtgatgcaagaatacacaat |
260 |
Q |
| |
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||||| | || |||||||| |||||||||| |||||| |||| |
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| T |
30125023 |
agatggatgcagttaagatacgggtgatgcatgaatacgcaat |
30124981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 28181080 - 28180965
Alignment:
| Q |
42 |
ttctagtcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagat |
141 |
Q |
| |
|
||||| |||||||||| ||||| || || |||| |||| | |||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||| |
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| T |
28181080 |
ttctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagat |
28180981 |
T |
|
| Q |
142 |
ggtttttatagtgatt |
157 |
Q |
| |
|
| ||||||||| |||| |
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| T |
28180980 |
gatttttatagggatt |
28180965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 30131177 - 30131068
Alignment:
| Q |
18 |
cagagtagggtcgttcttgaatggttctagtcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgaca |
117 |
Q |
| |
|
|||||| |||| |||||||||||| ||| |||||||||| ||||| || || |||| || |||||||||||| |||||| ||||||||||||||||| |
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| T |
30131177 |
cagagtcgggttgttcttgaatggggctattcattggctggtttataattatgagacaagaagggatgttattatagcctttaatttaaaggaaatgaca |
30131078 |
T |
|
| Q |
118 |
ctgtcagaga |
127 |
Q |
| |
|
||||||||| |
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| T |
30131077 |
atgtcagaga |
30131068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 30120170 - 30120068
Alignment:
| Q |
25 |
gggtcgttcttgaatggttctagtcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcag |
124 |
Q |
| |
|
|||| |||||||||||| ||| ||||||| || || || || || |||| | ||| |||||||||||||||||||||||||||||| |||| | |||| |
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|
| T |
30120170 |
gggttgttcttgaatggggctattcattgggtggttcataatcatgagaccaacatgaatgttattattgcctttgatttaaaggaaacgacaatatcag |
30120071 |
T |
|
| Q |
125 |
aga |
127 |
Q |
| |
|
||| |
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|
| T |
30120070 |
aga |
30120068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 258
Target Start/End: Complemental strand, 30130967 - 30130934
Alignment:
| Q |
225 |
tacacttaagatatgggtgatgcaagaatacaca |
258 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |
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| T |
30130967 |
tacagttaagatatgggtgatgcaagaatacaca |
30130934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 21426642 - 21426703
Alignment:
| Q |
81 |
ggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatg |
142 |
Q |
| |
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|||||||||||||||| ||||||||||||||| ||| ||||||||| ||||| ||||||| |
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|
| T |
21426642 |
ggatgttattattgcccttgatttaaaggaaacaacaatgtcagagatagctcttccagatg |
21426703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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