View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_19 (Length: 471)

Name: NF8260A_low_19
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_19
NF8260A_low_19
[»] chr2 (21 HSPs)
chr2 (10-465)||(44614345-44614800)
chr2 (29-241)||(44623510-44623722)
chr2 (228-465)||(44623751-44623991)
chr2 (244-354)||(39458954-39459064)
chr2 (272-378)||(39473637-39473743)
chr2 (11-101)||(39601861-39601951)
chr2 (244-380)||(39137521-39137657)
chr2 (138-208)||(39422491-39422561)
chr2 (244-333)||(39152307-39152396)
chr2 (272-390)||(39415040-39415158)
chr2 (244-375)||(39487723-39487854)
chr2 (138-208)||(39136281-39136351)
chr2 (9-99)||(39214730-39214820)
chr2 (272-378)||(39422018-39422124)
chr2 (138-204)||(39458209-39458275)
chr2 (142-206)||(39129487-39129551)
chr2 (138-208)||(39151898-39151968)
chr2 (43-97)||(39160992-39161046)
chr2 (43-97)||(39208148-39208202)
chr2 (346-388)||(39215415-39215457)
chr2 (138-208)||(39488192-39488262)
[»] chr8 (3 HSPs)
chr8 (228-337)||(40347398-40347507)
chr8 (113-379)||(44951213-44951476)
chr8 (122-241)||(40347250-40347369)
[»] chr7 (2 HSPs)
chr7 (244-380)||(19807471-19807607)
chr7 (138-208)||(19806642-19806712)
[»] chr5 (1 HSPs)
chr5 (140-180)||(17058843-17058883)


Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 10 - 465
Target Start/End: Original strand, 44614345 - 44614800
Alignment:
Q  10 agatgaagatgatattccttcgttgaatataaataaaaggccaggcaaatcagctgatatttcattttcctcgctgaggaaagaacttgcatcgttnnnn 109  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  44614345 agatgaagatgatattccttcgttgaatataaataaaaggtcaggcaaatcagctgatatttcattttcctcgctgaggaaagaacttgcatcgttaaaa 44614444  T
Q  110 nnntcatttgaggaatgcaatggacaaaaagtagaagagaggcgattgcggtctataaagagagatattgagaaatgctgcaaagagctagaaaataagg 209  Q
       |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614445 aaatcatttgaggaatgcaatggacaaaaagtagaagagaggcaattgcggtctataaagagagatattgagaaatgctgcaaagagctagaaaataagg 44614544  T
Q  210 agaccgaggttaaggaacttgagtctgaaaagggtgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacaaaagga 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44614545 agaccgaggttaaggaacttgagtctgaaaagggtgaatttgaaggcctggtggaggactttgaatcagaaaagaagcatttcgagagccgacaaaagga 44614644  T
Q  310 atttgaatcaaaagaaaaggaatttgaaagaagagtgaaggagttccagtcagaagaggaggaatttaaaggtcgagtgaaaatgtttgaaacaaagata 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  44614645 atttgaatcaaaagaaaaggaatttgaaagaagagtgaaggagttccagtcagaagaggaggaatttaaaggtcgagtgaaaatgtttgaaacaaaggta 44614744  T
Q  410 gaggaatttgaaggaaaaatgcagcaaattgaaaaccaaactgaggacaatctcaa 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614745 gaggaatttgaaggaaaaatgcagcaaattgaaaaccaaactgaggacaatctcaa 44614800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 29 - 241
Target Start/End: Original strand, 44623510 - 44623722
Alignment:
Q  29 tcgttgaatataaataaaaggccaggcaaatcagctgatatttcattttcctcgctgaggaaagaacttgcatcgttnnnnnnntcatttgaggaatgca 128  Q
    |||||||| |||||||||| |||||| ||||||||||||| ||||||||||  ||||||||||||||||||||||||       ||||| | ||||||||    
T  44623510 tcgttgaacataaataaaaagccaggaaaatcagctgataattcattttccatgctgaggaaagaacttgcatcgttaaaaaaatcattcgcggaatgca 44623609  T
Q  129 atggacaaaaagtagaagagaggcgattgcggtctataaagagagatattgagaaatgctgcaaagagctagaaaataaggagaccgaggttaaggaact 228  Q
    | |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||| | ||||||||| |    
T  44623610 acggacaacaagtagaagagaggcgattgcggtctataaagagagatattgagaagtgctgcgaagagctagaaaatatggagacccaagttaaggaatt 44623709  T
Q  229 tgagtctgaaaag 241  Q
    |||| ||||||||    
T  44623710 tgagactgaaaag 44623722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 228 - 465
Target Start/End: Original strand, 44623751 - 44623991
Alignment:
Q  228 ttgagtctgaaaagggtgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaa 327  Q
    |||| ||| ||||||||||||| ||||||||  ||| |||||||||||||||||| | | |||||||||| ||||||||||| |||||||||||||||||    
T  44623751 ttgaatctaaaaagggtgaattggaaggcctattgagggactttgaatcagaaaaaacgaatttcgagagacgacaaaaggagtttgaatcaaaagaaaa 44623850  T
Q  328 ggaatttgaaagaagagtgaaggagttccagtcagaagaggaggaatttaaaggtcgagtgaaaatg---tttgaaacaaagatagaggaatttgaagga 424  Q
    |||||| |||| |||||||| ||||||||| ||| |||| ||||||||||||| || ||||||| |    |||||| |||||  |||| |||| |||| |    
T  44623851 ggaattcgaaataagagtgatggagttccaatcaaaagaagaggaatttaaagttcaagtgaaagtactttttgaagcaaaggaagagaaattcgaagta 44623950  T
Q  425 aaaatgcagcaaattgaaaaccaaactgaggacaatctcaa 465  Q
    |||||||||||| ||||||| |||  |||||||||||||||    
T  44623951 aaaatgcagcaatttgaaaatcaagttgaggacaatctcaa 44623991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 354
Target Start/End: Original strand, 39458954 - 39459064
Alignment:
Q  244 tgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaaggaatttgaaagaaga 343  Q
    |||||||||||||| ||||||||| || ||||||||||||||||||||||||||| | |  |||||  | ||||||||||||||| |||||||| ||  |    
T  39458954 tgaatttgaaggccgggtgaaggagttggaatcagaaaagaagcatttcgagagcaggctgaaggagctcgaatcaaaagaaaagcaatttgaaggacaa 39459053  T
Q  344 gtgaaggagtt 354  Q
    |||||||||||    
T  39459054 gtgaaggagtt 39459064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 272 - 378
Target Start/End: Complemental strand, 39473743 - 39473637
Alignment:
Q  272 gaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaaggaatttgaaagaagagtgaaggagttccagtcagaagaggagg 371  Q
    |||||||||||||||||||||||||||| ||  |||||  | ||||||||||||||| ||||| |  ||  ||||||||||||||||||| |||||||||    
T  39473743 gaatcagaaaagaagcatttcgagagccaactgaaggagctcgaatcaaaagaaaagaaatttaatggacaagtgaaggagttccagtcaaaagaggagg 39473644  T
Q  372 aatttaa 378  Q
    |||||||    
T  39473643 aatttaa 39473637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 39601861 - 39601951
Alignment:
Q  11 gatgaagatgatattccttcgttgaatataaataaaaggccaggcaaatcagctgatatttcattttcctcgctgaggaaagaacttgcat 101  Q
    ||||||||||||||||||| |||| || ||| |||||||||| |||||||| ||||||  |||||||||||||||| |||||  |||||||    
T  39601861 gatgaagatgatattcctttgttggatttaattaaaaggccaagcaaatcaactgataaatcattttcctcgctgaagaaaggccttgcat 39601951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 380
Target Start/End: Original strand, 39137521 - 39137657
Alignment:
Q  244 tgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaaggaatttgaaagaaga 343  Q
    |||||||||||||  |||||||||  | ||||| |||||||||||||| ||||||||||| ||| |  ||||| || |||||||| ||| ||||  |  |    
T  39137521 tgaatttgaaggcagggtgaaggaactcgaatctgaaaagaagcattttgagagccgacagaagcagcttgaaacacaagaaaagcaatatgaagaacaa 39137620  T
Q  344 gtgaaggagttccagtcagaagaggaggaatttaaag 380  Q
     ||||||||||||||||| |||| |||||||| ||||    
T  39137621 atgaaggagttccagtcaaaagaagaggaattcaaag 39137657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 39422561 - 39422491
Alignment:
Q  138 aagtagaagagaggcgattgcggtctataaagagagatattgagaaatgctgcaaagagctagaaaataag 208  Q
    |||||||||||| |  ||||| ||| |||||||||||||||||||| |||||||||||||| |||||||||    
T  39422561 aagtagaagagaagatattgcagtccataaagagagatattgagaagtgctgcaaagagctggaaaataag 39422491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 333
Target Start/End: Original strand, 39152307 - 39152396
Alignment:
Q  244 tgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaaggaatt 333  Q
    |||||||||||||| ||||||| |  | |||||||||||||||||||||||||||||||  |||||  | |||||||  |||||||||||    
T  39152307 tgaatttgaaggccaggtgaagaagctggaatcagaaaagaagcatttcgagagccgactgaaggagctcgaatcaatggaaaaggaatt 39152396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 390
Target Start/End: Complemental strand, 39415158 - 39415040
Alignment:
Q  272 gaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaaggaatttgaaagaa-gagtgaaggagttccagtcagaagaggag 370  Q
    ||||||||||||||||||||||| |||| ||  |||||  ||||||||||||||||  || || |||||| || |||| |||||||||||| ||||||||    
T  39415158 gaatcagaaaagaagcatttcgaaagccaactgaaggagcttgaatcaaaagaaaatcaa-ttcaaagaacgaatgaaagagttccagtcaaaagaggag 39415060  T
Q  371 gaatttaaaggtcgagtgaa 390  Q
    ||| | ||||| | ||||||    
T  39415059 gaactcaaaggacaagtgaa 39415040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 375
Target Start/End: Complemental strand, 39487854 - 39487723
Alignment:
Q  244 tgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaaggaatttgaaagaaga 343  Q
    |||||||||||||| |||||||||    ||||| |||||||||||||  ||||||||||| |||||  | ||| || |||||||| ||  ||||  |  |    
T  39487854 tgaatttgaaggccgggtgaaggagcccgaatctgaaaagaagcattctgagagccgacagaaggagctcgaagcacaagaaaagcaacatgaagaacaa 39487755  T
Q  344 gtgaaggagttccagtcagaagaggaggaatt 375  Q
     ||||||||||||||||| |||||||||||||    
T  39487754 atgaaggagttccagtcaaaagaggaggaatt 39487723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 39136281 - 39136351
Alignment:
Q  138 aagtagaagagaggcgattgcggtctataaagagagatattgagaaatgctgcaaagagctagaaaataag 208  Q
    |||||||||||||| |||||| ||| |||||||||||||||||| | |||||| |||| || |||||||||    
T  39136281 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataag 39136351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 39214730 - 39214820
Alignment:
Q  9 gagatgaagatgatattccttcgttgaatataaataaaaggccaggcaaatcagctgatatttcattttcctcgctgaggaaagaacttgc 99  Q
    |||||||||||||||||| || || | || ||| ||||||||||||||||||| |  |||  |||||||||||||||| |||||| |||||    
T  39214730 gagatgaagatgatattcttttgtcggatttaattaaaaggccaggcaaatcaacccataaatcattttcctcgctgaagaaagaccttgc 39214820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 272 - 378
Target Start/End: Complemental strand, 39422124 - 39422018
Alignment:
Q  272 gaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaaggaatttgaaagaagagtgaaggagttccagtcagaagaggagg 371  Q
    |||||||||||||||||||| || |||||||  |||||  | ||||||| ||||||| |||| ||  ||  | |||||||||||| |||| |||||||||    
T  39422124 gaatcagaaaagaagcattttgaaagccgactgaaggatctcgaatcaatagaaaagaaattcgatggacaaatgaaggagttcctgtcaaaagaggagg 39422025  T
Q  372 aatttaa 378  Q
    |||||||    
T  39422024 aatttaa 39422018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 39458209 - 39458275
Alignment:
Q  138 aagtagaagagaggcgattgcggtctataaagagagatattgagaaatgctgcaaagagctagaaaa 204  Q
    |||||||||||| | |||||| ||| |||||||||||||||||| | ||||||||||| || |||||    
T  39458209 aagtagaagagaagagattgcagtccataaagagagatattgaggagtgctgcaaagatcttgaaaa 39458275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 39129487 - 39129551
Alignment:
Q  142 agaagagaggcgattgcggtctataaagagagatattgagaaatgctgcaaagagctagaaaata 206  Q
    |||||||| | |||||| ||| |||||||||||||||||| | |||| ||||||||| |||||||    
T  39129487 agaagagaagagattgcagtccataaagagagatattgaggagtgctccaaagagcttgaaaata 39129551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 39151898 - 39151968
Alignment:
Q  138 aagtagaagagaggcgattgcggtctataaagagagatattgagaaatgctgcaaagagctagaaaataag 208  Q
    |||||||||||| | || ||| ||| ||||||||| |||||||| || ||| ||||||||| |||||||||    
T  39151898 aagtagaagagaagagactgcagtcaataaagagaaatattgaggaacgctccaaagagcttgaaaataag 39151968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 39160992 - 39161046
Alignment:
Q  43 taaaaggccaggcaaatcagctgatatttcattttcctcgctgaggaaagaactt 97  Q
    ||||| |||| ||||||||||||||   |||||||||||||||| ||||||||||    
T  39160992 taaaaagccaagcaaatcagctgatgaatcattttcctcgctgatgaaagaactt 39161046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 39208202 - 39208148
Alignment:
Q  43 taaaaggccaggcaaatcagctgatatttcattttcctcgctgaggaaagaactt 97  Q
    ||||| |||| ||||||||||||||   |||||||||||||||| ||||||||||    
T  39208202 taaaaagccaagcaaatcagctgatgaatcattttcctcgctgatgaaagaactt 39208148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 39215415 - 39215457
Alignment:
Q  346 gaaggagttccagtcagaagaggaggaatttaaaggtcgagtg 388  Q
    |||||||||||||||| || |||||||||||||||||| ||||    
T  39215415 gaaggagttccagtcaaaacaggaggaatttaaaggtcaagtg 39215457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 39488262 - 39488192
Alignment:
Q  138 aagtagaagagaggcgattgcggtctataaagagagatattgagaaatgctgcaaagagctagaaaataag 208  Q
    ||||||||||| || || ||| |||||||||||||||| ||||| | ||||  |||||||| |||||||||    
T  39488262 aagtagaagaggggagactgcagtctataaagagagatgttgaggagtgctctaaagagcttgaaaataag 39488192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 228 - 337
Target Start/End: Original strand, 40347398 - 40347507
Alignment:
Q  228 ttgagtctgaaaagggtgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaa 327  Q
    |||| ||| ||||||||||||||||| | ||| ||||||||||||||||||||||   | |||||||||||||||||||||| |||||||||||||||||    
T  40347398 ttgaatctaaaaagggtgaatttgaatggctgatgaaggactttgaatcagaaaaattgaatttcgagagccgacaaaaggagtttgaatcaaaagaaaa 40347497  T
Q  328 ggaatttgaa 337  Q
    ||| ||||||    
T  40347498 ggagtttgaa 40347507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 113 - 379
Target Start/End: Complemental strand, 44951476 - 44951213
Alignment:
Q  113 tcatttgaggaatgcaatggacaaaaagtagaagagaggcgattgcggtctataaagagagatattgagaaatgctgcaaagagctagaaaataaggaga 212  Q
    ||||||||||||||||| || |||   ||||||||||||| ||||||| | ||||||||||||||| |||| |||||| ||||||| |||||||||||||    
T  44951476 tcatttgaggaatgcaacgggcaa---gtagaagagaggcaattgcggccgataaagagagatattaagaagtgctgcgaagagcttgaaaataaggaga 44951380  T
Q  213 ccgaggttaaggaacttgagtctgaaaagggtgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacaaaaggaatt 312  Q
    || | ||||| |||||||||||| |||||  |  | ||   ||||  || ||||| |||||||| |||||    |||||||||| ||||   ||||| ||    
T  44951379 cccaagttaatgaacttgagtctaaaaagaatatacttattggccgagtaaaggagtttgaatctgaaaaagcacatttcgagatccgaatgaaggagtt 44951280  T
Q  313 tgaatcaaaagaaaaggaatttgaaagaa-gagtgaaggagttccagtcagaagaggaggaatttaaa 379  Q
    |||||||| ||||||  || || ||||||  || ||||||||| |||||| |||||||||||||||||    
T  44951279 tgaatcaagagaaaa-taaattcaaagaacaagagaaggagtttcagtcaaaagaggaggaatttaaa 44951213  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 40347250 - 40347369
Alignment:
Q  122 gaatgcaatggacaaaaagtagaagagaggcgattgcggtctataaagagagatattgagaaatgctgcaaagagctagaaaataaggagaccgaggtta 221  Q
    ||||||||| ||||| ||||| ||| ||||||||||||||| || |||| || | ||||||| || ||||||||||||||||||| ||||||| | ||||    
T  40347250 gaatgcaatagacaacaagtaaaagtgaggcgattgcggtccattaagaaagctgttgagaagtgttgcaaagagctagaaaatatggagacccaagtta 40347349  T
Q  222 aggaacttgagtctgaaaag 241  Q
    || ||||||| |||||||||    
T  40347350 agaaacttgaatctgaaaag 40347369  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 244 - 380
Target Start/End: Original strand, 19807471 - 19807607
Alignment:
Q  244 tgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaaggaatttgaaagaaga 343  Q
    |||||||||||||| || ||||||  | ||||| |||||||||||||||||||||||||| |||    | ||| || |||||||| ||| ||||  |  |    
T  19807471 tgaatttgaaggccgggcgaaggagctcgaatctgaaaagaagcatttcgagagccgacagaagcggctcgaaacacaagaaaagcaatatgaagaacaa 19807570  T
Q  344 gtgaaggagttccagtcagaagaggaggaatttaaag 380  Q
     ||||||||||||||||| |||| |||||||| ||||    
T  19807571 atgaaggagttccagtcaaaagaagaggaattcaaag 19807607  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 19806642 - 19806712
Alignment:
Q  138 aagtagaagagaggcgattgcggtctataaagagagatattgagaaatgctgcaaagagctagaaaataag 208  Q
    |||||||||||||| |||||| ||| |||||||||||||||||| | |||||| |||| || |||||||||    
T  19806642 aagtagaagagaggagattgcagtccataaagagagatattgaggattgctgcgaagatcttgaaaataag 19806712  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 17058843 - 17058883
Alignment:
Q  140 gtagaagagaggcgattgcggtctataaagagagatattga 180  Q
    |||||||| | |||||||| |||||||||||||||||||||    
T  17058843 gtagaagaaaagcgattgcagtctataaagagagatattga 17058883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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