View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_190 (Length: 284)
Name: NF8260A_low_190
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_190 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 21832010 - 21831747
Alignment:
| Q |
1 |
aataggatgcataatttcatgataatcagcattcgtctcttacatcaaatatggtatcaacaaaacaagttcatcttatagagatctcatcaaccacatg |
100 |
Q |
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| T |
21832010 |
aataggatgcataatttcatgataatcagcattcgtctcttacaccaaatatggtatcaacaaaacaagttcatcttatagagatctcatcaaccacatg |
21831911 |
T |
|
| Q |
101 |
gagttcgaacttgaaataacctgaaaatacatttaaaataagcnnnnnnnnnnnnnctttgtagaccgataaaaacatcaatgaggacattagatctcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21831910 |
gagttcgaacttgaaataacctgaaaatacatttaaaataagcaaaaaaaaaaaaactttgtagaccgataaaaacatcaatgaggacattagatctcaa |
21831811 |
T |
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| Q |
201 |
acatggtattaatggagtgatcaaataccacgatcgctttcgaggagggcacttggataccaag |
264 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21831810 |
acatggtattaatggagtgatcaaataccacgatggctttcgaggagggcacttggataccaag |
21831747 |
T |
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