View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_197 (Length: 281)
Name: NF8260A_low_197
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_197 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 5e-99; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 48 - 264
Target Start/End: Complemental strand, 30810542 - 30810322
Alignment:
| Q |
48 |
catgtgttcatggatatagccgcgagccattattgtgtcaatattatattataatcatttgttaaaagaaggactaatgaatattgaagatagaataagt |
147 |
Q |
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| T |
30810542 |
catgtgttcatggatatagccgcgagccattgttgtgtcaatattatattataatcatttgttaaaagaaggactaatcaatattgaagatagaataagt |
30810443 |
T |
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| Q |
148 |
aaataaatgttga--agagtttttatagtgtaaaagaaatttgaaggtaactatgtatt--tatataatatagtagatgaagaggggtagacatacacat |
243 |
Q |
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| T |
30810442 |
aaataaatgttgaatagagtttttatagtgtaaaagaaatttgaaggtaactttgtatttatatataatatagtagatgaagagaggtagacatacacat |
30810343 |
T |
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| Q |
244 |
ttaatgtgaggggagattgtg |
264 |
Q |
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| T |
30810342 |
ttaatgtgaggggagattgtg |
30810322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 35 - 145
Target Start/End: Complemental strand, 30815028 - 30814920
Alignment:
| Q |
35 |
tattaggatatatcatgtgttcatggatatagccgcgagccattattgtgtcaatattatattataatcatttgttaaaagaaggactaatgaatattga |
134 |
Q |
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| T |
30815028 |
tattagcatatatcatgtattcata-atctagtcgtgagtcattgttgtgtcaatattatattataatcatttgttaaaagaa-gaccaatcaatattga |
30814931 |
T |
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| Q |
135 |
agatagaataa |
145 |
Q |
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| T |
30814930 |
aaataaaataa |
30814920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 30820209 - 30820124
Alignment:
| Q |
61 |
atatagccgcgagccattattgtgtcaatattatattataatcatttgttaaaagaaggactaatgaatattgaagatagaataag |
146 |
Q |
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| T |
30820209 |
atatagccgtgagtcactgttgtgccaatattatattatagtcatttgttaaaagaaggaccaatcaatattgaagttcgaataag |
30820124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 30811365 - 30811333
Alignment:
| Q |
15 |
aacctgtggccatcaaactttattaggatatat |
47 |
Q |
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| T |
30811365 |
aacctgtggccatcaaactttattaggatatat |
30811333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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