View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_20 (Length: 470)

Name: NF8260A_low_20
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_20
NF8260A_low_20
[»] chr3 (12 HSPs)
chr3 (47-166)||(18017924-18018043)
chr3 (3-77)||(19401626-19401700)
chr3 (161-210)||(18018160-18018209)
chr3 (161-210)||(19401945-19401994)
chr3 (50-130)||(17725513-17725593)
chr3 (50-130)||(19026742-19026822)
chr3 (208-250)||(19458165-19458207)
chr3 (209-286)||(19402441-19402513)
chr3 (9-49)||(17951701-17951741)
chr3 (42-80)||(19377528-19377566)
chr3 (126-166)||(19401790-19401828)
chr3 (42-86)||(24496442-24496486)


Alignment Details
Target: chr3 (Bit Score: 116; Significance: 8e-59; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 18017924 - 18018043
Alignment:
Q  47 tggagaaagtggattacttctatttattatctctctatatatcagattatttagatggttgtagaatatgagtttatgtagaaagtgataaaaatgatag 146  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18017924 tggagaaagtggattacttctttttattatctctctatatatcagattatttagatggttgtagaatatgagtttatgtagaaagtgataaaaatgatag 18018023  T
Q  147 tatgttgacattattgacaa 166  Q
    ||||||||||||||||||||    
T  18018024 tatgttgacattattgacaa 18018043  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 19401626 - 19401700
Alignment:
Q  3 aatttgtgttaaatgtagtgattttggataatgttgtcattttatggagaaagtggattacttctatttattatc 77  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  19401626 aatttgtgttaaatgtagtgattttggataatgttctcattttatggagaaagtggattacttctttttattatc 19401700  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 18018160 - 18018209
Alignment:
Q  161 tgacaagtaatttaaatttagtttgcatggtcaaggaatcagaatttgat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18018160 tgacaagtaatttaaatttagtttgcatggtcaaggaatcagaatttgat 18018209  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 19401945 - 19401994
Alignment:
Q  161 tgacaagtaatttaaatttagtttgcatggtcaaggaatcagaatttgat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19401945 tgacaagtaatttaaatttagtttgcatggtcaaggaatcagaatttgat 19401994  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 17725593 - 17725513
Alignment:
Q  50 agaaagtggattacttctatttattatctctctatatatcagattatttagatggttgtagaatatgagtttatgtagaaa 130  Q
    |||||||||||||||||| ||||| ||||||| |||| |||| ||||  |||||||||||||||| |||||| ||||||||    
T  17725593 agaaagtggattacttctttttatgatctctcaatatgtcagtttatgcagatggttgtagaataagagtttgtgtagaaa 17725513  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 19026822 - 19026742
Alignment:
Q  50 agaaagtggattacttctatttattatctctctatatatcagattatttagatggttgtagaatatgagtttatgtagaaa 130  Q
    |||||||||||||||||| ||||| ||||||| |||| |||| ||||  |||||||||||||||| |||||| ||||||||    
T  19026822 agaaagtggattacttctttttatgatctctcaatatgtcagtttatgcagatggttgtagaataagagtttgtgtagaaa 19026742  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 208 - 250
Target Start/End: Original strand, 19458165 - 19458207
Alignment:
Q  208 gataacaagtgcattccttgacaactctcaaaatctgtattgt 250  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  19458165 gataacaagtgcattccttgacaactctcaaaatctgtattgt 19458207  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 286
Target Start/End: Original strand, 19402441 - 19402513
Alignment:
Q  209 ataacaagtgcattccttgacaactctcaaaatctgtattgttatcttatccactgctaatcaaaaggagaacaatat 286  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||     |||| |||||||||||| | |||||||    
T  19402441 ataacaagtgcattcattgacaactctcaaaatctgtattgttatc-----cactactaatcaaaaggcgcacaatat 19402513  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 17951701 - 17951741
Alignment:
Q  9 tgttaaatgtagtgattttggataatgttgtcattttatgg 49  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  17951701 tgttaaatgtagtgattttggataatgttctcattttatgg 17951741  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 19377528 - 19377566
Alignment:
Q  42 ttttatggagaaagtggattacttctatttattatctct 80  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  19377528 ttttgtggagaaagtggattacttctttttattatctct 19377566  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 19401790 - 19401828
Alignment:
Q  126 agaaagtgataaaaatgatagtatgttgacattattgacaa 166  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  19401790 agaaagtgataaaaatgatagta--ttgacattattgacaa 19401828  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 24496486 - 24496442
Alignment:
Q  42 ttttatggagaaagtggattacttctatttattatctctctatat 86  Q
    |||| ||||||||||||| ||||||| | ||||||||||||||||    
T  24496486 ttttgtggagaaagtggaatacttctttctattatctctctatat 24496442  T

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