View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_200 (Length: 279)
Name: NF8260A_low_200
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_200 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 40586106 - 40586365
Alignment:
| Q |
16 |
catcaatgaggaaatcaagcacagagaaaaagaaaggttaagataccatttgttggaggtgttgtatatgga------gctggagcaggagctggaggtg |
109 |
Q |
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| T |
40586106 |
catcaatgaggaaatcaagcacagagaaaaagaaaggttaagataccatttgttggaggtgttgtatatggagctggagctggagcaggagctggaggtg |
40586205 |
T |
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| Q |
110 |
gagttggataaggagcaagtggaactggcattataaaataactaagtcaaaagtattatttttctgtgccaaattctacaaacagaacaaagcacttcca |
209 |
Q |
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| T |
40586206 |
gagttggataaggagcaagtggaactggcattataaaagaactaagtcaaaagtattatttttctgtgccaaattctacaaacagaacaaagcacttcca |
40586305 |
T |
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| Q |
210 |
ttcattttttcaactcctggaaaaggaagaaatatagtaaaagattcattcaagagggag |
269 |
Q |
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| T |
40586306 |
tccattttttcaactcctggaaaaggaagaaatatagtaaaagattcattcaagagggag |
40586365 |
T |
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