View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_205 (Length: 278)
Name: NF8260A_low_205
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_205 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 25 - 271
Target Start/End: Complemental strand, 5251406 - 5251172
Alignment:
| Q |
25 |
ttcattcctttgtatannnnnnncgattgttttaaaattatcatggatgaacctgtttgttaaaattgtttgcattatacacttatctttcatttccttc |
124 |
Q |
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| T |
5251406 |
ttcattcctttgtatatttttttcgattgttttaaaattatcatggatgaacctgtttgttaaaattgtttgcattat----------ttcatttccttc |
5251317 |
T |
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| Q |
125 |
gcttcatcatcgctctagtgcttaaccactattcttatgnnnnnnnnnnnnnnnnnngacaaaaaccactattcttatgctgtaacacttgttttttgtg |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
5251316 |
gcttcatcatcgctctagtgcttaaccactattcttatttattttattattttttat--caaaaaccactattcttatgttgtaacacttgttttttgtg |
5251219 |
T |
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| Q |
225 |
ctttcagcaaagaaacattttatatataaaatccaacatcaacacca |
271 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5251218 |
ctttctgcaaagaaacattttatatataaaatccaacatcaacacca |
5251172 |
T |
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