View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_212 (Length: 272)
Name: NF8260A_low_212
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_212 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 15113141 - 15113400
Alignment:
| Q |
13 |
atggggacaatatgcatctacatctcttaaggggcaaaaacttccatttcctgaatccaagaatttgggaggtccatacccagctgagttggttttggag |
112 |
Q |
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| T |
15113141 |
atggggtcaatatgcatctacatcttgtaaggggcaaaaacttccatttcctgaatccaagaatttgggaggtccatacccagctgagttggctttggag |
15113240 |
T |
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| Q |
113 |
aaagtgattagagctatgtcaaagcctgtgcatttgctcaatattaccaccttgtcaaaattgaggaaagatgctcatccatctgtatatacaggacatg |
212 |
Q |
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| T |
15113241 |
aaagtgataagagccatgtcaaagcctgtgcatttgctcaatattaccaccttgtcaaaattgaggaaagatgctcacccatctgtacatacaggacatg |
15113340 |
T |
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| Q |
213 |
gtggtcataccaatgattgcagccattggtgtctgcctggtgttcctgatacttggaata |
272 |
Q |
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| T |
15113341 |
gtggtcataccaatgattgcagccattggtgtctgcctggtgttcctgatacttggaata |
15113400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 29362395 - 29362350
Alignment:
| Q |
226 |
tgattgcagccattggtgtctgcctggtgttcctgatacttggaat |
271 |
Q |
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| T |
29362395 |
tgattgtagccattggtgtcttcctggtttgcctgatacttggaat |
29362350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 30270355 - 30270400
Alignment:
| Q |
226 |
tgattgcagccattggtgtctgcctggtgttcctgatacttggaat |
271 |
Q |
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| T |
30270355 |
tgattgtagccattggtgtcttcctggtttgcctgatacttggaat |
30270400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 18358919 - 18358875
Alignment:
| Q |
227 |
gattgcagccattggtgtctgcctggtgttcctgatacttggaat |
271 |
Q |
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| T |
18358919 |
gattgcagccattggtgcctagctggtgttcctgatacttggaat |
18358875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 25962718 - 25962762
Alignment:
| Q |
227 |
gattgcagccattggtgtctgcctggtgttcctgatacttggaat |
271 |
Q |
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| T |
25962718 |
gattgcagtcattggtgtcttcctggtttacctgatacttggaat |
25962762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 5232918 - 5232953
Alignment:
| Q |
236 |
cattggtgtctgcctggtgttcctgatacttggaat |
271 |
Q |
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| T |
5232918 |
cattggtgtttgcctggtgttcctgatacttggaat |
5232953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 4075304 - 4075260
Alignment:
| Q |
227 |
gattgcagccattggtgtctgcctggtgttcctgatacttggaat |
271 |
Q |
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| T |
4075304 |
gattgcatacattggtgtctccctggtgtgcctgatacttggaat |
4075260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 50750204 - 50750159
Alignment:
| Q |
226 |
tgattgcagccattggtgtctgcctggtgttcctgatacttggaat |
271 |
Q |
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| T |
50750204 |
tgattgcagccattggtgcctccctggtgtgcctgatatttggaat |
50750159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 29447744 - 29447700
Alignment:
| Q |
227 |
gattgcagccattggtgtctgcctggtgttcctgatacttggaat |
271 |
Q |
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| T |
29447744 |
gattgcagccattggtgtttgcctggagtaccagatacttggaat |
29447700 |
T |
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