View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_213 (Length: 272)
Name: NF8260A_low_213
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_213 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 26669241 - 26668970
Alignment:
| Q |
1 |
tcagtcggaacattaaaaccctcttttcctaacctctcaatcagcacttccggaataccgagttccgaaaaagacttagcagcaaaaggggcattctcta |
100 |
Q |
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| T |
26669241 |
tcagtcggaacattaaaaccctcttttcctaacctctcaatcaacacttccggaataccgagttccgaaaacgacttagcagcaaaaggggcattctcta |
26669142 |
T |
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| Q |
101 |
tttcttttctctctttaaccctaacacttttcttctcactaattccaaagggttttcttttcaccttgaaaccctcagaagaagataaacctaacggctt |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26669141 |
tttcttttctctctttaatcctaacacttttcttctcactaattccaaagggttttcttttcaccttgaaaccctcagaagaagataaacctaacggctt |
26669042 |
T |
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| Q |
201 |
aaccttgttttcttcacttgtaagctttggctcaatttcactttcaaaaccaacgcttgaaagggtcaaaga |
272 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26669041 |
aaccttgttttcttcacttgtaatctttggctcaatttcactttcaaaaccaacgcttgaaagggtcaaaga |
26668970 |
T |
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