View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_218 (Length: 270)

Name: NF8260A_low_218
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_218
NF8260A_low_218
[»] chr3 (27 HSPs)
chr3 (1-250)||(41985600-41985852)
chr3 (9-248)||(41980834-41981073)
chr3 (1-131)||(9494822-9494952)
chr3 (29-250)||(9448314-9448535)
chr3 (29-145)||(9343845-9343961)
chr3 (1-145)||(9407338-9407482)
chr3 (1-142)||(9425545-9425686)
chr3 (37-145)||(9329844-9329952)
chr3 (37-145)||(9336548-9336656)
chr3 (1-145)||(9617463-9617607)
chr3 (29-142)||(9655360-9655473)
chr3 (2-145)||(9695616-9695759)
chr3 (29-142)||(9646367-9646480)
chr3 (1-145)||(9397757-9397903)
chr3 (1-131)||(9352873-9353003)
chr3 (37-130)||(9340679-9340772)
chr3 (43-145)||(9416587-9416689)
chr3 (1-92)||(9377058-9377149)
chr3 (37-130)||(9347995-9348088)
chr3 (37-130)||(9369649-9369742)
chr3 (30-151)||(9756381-9756502)
chr3 (29-145)||(9432896-9433012)
chr3 (11-111)||(9441815-9441915)
chr3 (1-89)||(9614009-9614097)
chr3 (29-137)||(9626488-9626596)
chr3 (97-145)||(9686751-9686799)
chr3 (30-59)||(16011768-16011797)
[»] chr8 (2 HSPs)
chr8 (1-250)||(44688680-44688929)
chr8 (85-250)||(13170579-13170744)
[»] chr1 (8 HSPs)
chr1 (1-250)||(18991176-18991422)
chr1 (1-140)||(4428603-4428742)
chr1 (1-96)||(4439832-4439927)
chr1 (29-127)||(235213-235311)
chr1 (7-122)||(8814385-8814500)
chr1 (29-127)||(251412-251510)
chr1 (3-120)||(246841-246958)
chr1 (37-122)||(231589-231674)
[»] chr2 (1 HSPs)
chr2 (1-142)||(20694304-20694445)
[»] chr6 (7 HSPs)
chr6 (1-145)||(7041468-7041612)
chr6 (7-127)||(7046817-7046937)
chr6 (1-127)||(7025722-7025854)
chr6 (1-127)||(7012786-7012918)
chr6 (66-127)||(7029850-7029911)
chr6 (66-127)||(9170854-9170915)
chr6 (66-125)||(9159515-9159574)
[»] chr7 (2 HSPs)
chr7 (1-132)||(3695662-3695792)
chr7 (37-145)||(450111-450219)
[»] chr5 (2 HSPs)
chr5 (7-131)||(18571086-18571213)
chr5 (1-127)||(33541624-33541750)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 41985600 - 41985852
Alignment:
Q  1 aagatgacacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcca 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985600 aagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcca 41985699  T
Q  101 acttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41985700 acttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccggggaaaccaaaacaatgagagtcatatatgtctac 41985799  T
Q  201 tagcaacaac---tcacgctcactctctaccaggaatttcatgtcccctccat 250  Q
    ||||||||||   |||| |||||||||||||||||||||||||||||||||||    
T  41985800 tagcaacaactgatcaccctcactctctaccaggaatttcatgtcccctccat 41985852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 41980834 - 41981073
Alignment:
Q  9 acaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacc 108  Q
    |||||||||||||||| |||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41980834 acaatttcctttgacaacagacaaatttgaagcagaagcaaaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgtcaacttgacc 41980933  T
Q  109 catttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaaca 208  Q
    ||||||||||| |||| | |||| || ||||||||||| || |||||||||||||||||||| |||| ||||||||||| ||| ||||| |||||||| |    
T  41980934 catttcttctctttcttagcaagcctaaacacatcaagattgaaaccatcttcaccagggaacccaacacaatgagagtgataaatgtccactagcaata 41981033  T
Q  209 actcacgctcactctctaccaggaatttcatgtcccctcc 248  Q
    | |||| |||||||||||||||||||||||  ||||||||    
T  41981034 attcaccctcactctctaccaggaatttcacatcccctcc 41981073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 9494952 - 9494822
Alignment:
Q  1 aagatgacacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcca 100  Q
    |||||||||||||| ||||||  | |  ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||    
T  9494952 aagatgacacaattccctttggaaacgcacaaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctatcccctaaactcatca 9494853  T
Q  101 acttgacccatttcttctccttctcatcaag 131  Q
    | || |||||| || ||||||||||||||||    
T  9494852 aattcacccatctcatctccttctcatcaag 9494822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 250
Target Start/End: Original strand, 9448314 - 9448535
Alignment:
Q  29 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 128  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||| | |  ||||| ||||||||||||||||||||||     
T  9448314 acaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcata 9448413  T
Q  129 aagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctacc 228  Q
    |||  | |||||||||| | ||| | ||||   ||| |||||  | ||||||  | | ||||| ||||| ||||||||||| || | ||| || || ||     
T  9448414 aagcttaaacacatcaacccttatagcatcaggacccgggaactcgaaacaaaaacactcataaatgtccactagcaacaagtctccctctctatcaact 9448513  T
Q  229 aggaatttcatgtcccctccat 250  Q
    | |||||| |||||||||||||    
T  9448514 aagaattttatgtcccctccat 9448535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 9343845 - 9343961
Alignment:
Q  29 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 128  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |  ||||| ||||| ||||||||| |||||||    
T  9343845 acaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatc 9343944  T
Q  129 aagtctgaacacatcaa 145  Q
    |||  | ||||||||||    
T  9343945 aagcttaaacacatcaa 9343961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 9407338 - 9407482
Alignment:
Q  1 aagatgacacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcca 100  Q
    |||| ||||||||| |||||| || || ||||||||||||| ||||||||||| |||||||||||| | ||||||||||| |||||||||||||||  ||    
T  9407338 aagaagacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctatcccctaaactcatca 9407437  T
Q  101 acttgacccatttcttctccttctcatcaagtctgaacacatcaa 145  Q
    |||| |||||| | || | |||||| |||||||| ||||||||||    
T  9407438 acttcacccatcttttattcttctcgtcaagtctaaacacatcaa 9407482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 9425545 - 9425686
Alignment:
Q  1 aagatgacacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcca 100  Q
    |||||||||||||| |||||| || || ||||||||||||| ||||||||||| |||||||||||| | ||||||||||| |||| || |||||||  ||    
T  9425545 aagatgacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctattccttaaactcatca 9425644  T
Q  101 acttgacccatttcttctccttctcatcaagtctgaacacat 142  Q
    |||| |||||||| || | |||||| |||||||| |||||||    
T  9425645 acttcacccattttttattcttctcgtcaagtctaaacacat 9425686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 9329844 - 9329952
Alignment:
Q  37 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 136  Q
    ||||||||||||||||||||| ||||||||||||||||||||||  |||| |||||| ||||||||||||||||  | ||||| ||||||||||| || |    
T  9329844 gaagcagaagcagaaaacgaatatccattccccaagaacaaaaccttatctcctaaattcgccaacttgacccaccttttctctttctcatcaagcctaa 9329943  T
Q  137 acacatcaa 145  Q
    |||||||||    
T  9329944 acacatcaa 9329952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 9336548 - 9336656
Alignment:
Q  37 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| ||| || |||||||||  | ||||| ||||||||||| || |    
T  9336548 gaagcagaagcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaa 9336647  T
Q  137 acacatcaa 145  Q
    |||||||||    
T  9336648 acacatcaa 9336656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 9617607 - 9617463
Alignment:
Q  1 aagatgacacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcca 100  Q
    |||||||||||||| ||||||  | || ||||||| ||||||||||||||||| |||||||||||| | | ||||||||| |||||||||||| |   ||    
T  9617607 aagatgacacaattccctttggaaacacacaaatctgaagcagaagcagaaaatgaacatccattcacaaggaacaaaaccctatcccctaaatttttca 9617508  T
Q  101 acttgacccatttcttctccttctcatcaagtctgaacacatcaa 145  Q
    |||| |||||||||||||| ||||||| ||  |||||||| ||||    
T  9617507 acttcacccatttcttctctttctcatgaaacctgaacacttcaa 9617463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 9655473 - 9655360
Alignment:
Q  29 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 128  Q
    ||||||||||||| || ||||||||||||||||| |  ||||| |||||||| |||||||||||| ||  |||||| ||||||||||||||||||||||     
T  9655473 acaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttctcatg 9655374  T
Q  129 aagtctgaacacat 142  Q
    || |||||| ||||    
T  9655373 aaatctgaaaacat 9655360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 145
Target Start/End: Complemental strand, 9695759 - 9695616
Alignment:
Q  2 agatgacacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaa 101  Q
    ||||||||||||| || ||  || || |||| || |||||||| ||||| ||||||||  | | |||||| |||||||| |||||||||||| | | |||    
T  9695759 agatgacacaattcccatttgcaacacacaactctgaagcagatgcagagaacgaacagtcttcccccaaaaacaaaaccctatcccctaaattggtcaa 9695660  T
Q  102 cttgacccatttcttctccttctcatcaagtctgaacacatcaa 145  Q
    ||||||||| |||||||||||||||||||| ||||| |||||||    
T  9695659 cttgacccacttcttctccttctcatcaagcctgaatacatcaa 9695616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 9646480 - 9646367
Alignment:
Q  29 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 128  Q
    ||||||||||||| || ||||||||||||||||| |  || || |||||||| |||||||||||| ||  |||||| ||||||||||||||||||||||     
T  9646480 acaaatccgaagctgatgcagaaaacgaacatccttcgccaaaaaacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttctcatg 9646381  T
Q  129 aagtctgaacacat 142  Q
    || |||||| ||||    
T  9646380 aaatctgaaaacat 9646367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 9397757 - 9397903
Alignment:
Q  1 aagatgacacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcca 100  Q
    |||| ||||||||| |||||| || || |||||||| |||| ||||| ||||| |||||||||||| | |||||||| || |||||||||||||||  ||    
T  9397757 aagacgacacaattccctttggcaacacacaaatccaaagctgaagcggaaaatgaacatccattcacaaagaacaagaccctatcccctaaactcatca 9397856  T
Q  101 acttgaccca--tttcttctccttctcatcaagtctgaacacatcaa 145  Q
    |||| || ||  ||| || | |||||| |||||||| ||||||||||    
T  9397857 acttcacgcattttttttatacttctcgtcaagtctaaacacatcaa 9397903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 9352873 - 9353003
Alignment:
Q  1 aagatgacacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcca 100  Q
    |||||||||||||||||||||  |  | ||| |||| || ||||||||||||||||||||||| ||||||  |||||||| ||| |||||||  |   ||    
T  9352873 aagatgacacaatttcctttgggaagacacagatcccaaccagaagcagaaaacgaacatccactccccacaaacaaaaccctaccccctaattttttca 9352972  T
Q  101 acttgacccatttcttctccttctcatcaag 131  Q
    |||| ||||| ||||||||| ||||||||||    
T  9352973 acttcacccacttcttctccatctcatcaag 9353003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 9340679 - 9340772
Alignment:
Q  37 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 130  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||| |||||||| ||| ||  |||||| ||||| |||||||||||||||||||    
T  9340679 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaaccctatccccgaaattcctcaacttcacccacttcttctccttctcatcaa 9340772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 9416587 - 9416689
Alignment:
Q  43 gaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 142  Q
    ||||||||||| ||||||  |||| | |||||||| || |||||||||||||||| |||||| |||||||| || | |||||| ||||| | ||||||||    
T  9416587 gaagcagaaaatgaacatttattcacgaagaacaacaccctatcccctaaactcgtcaacttcacccattttttattcttctcgtcaagacagaacacat 9416686  T
Q  143 caa 145  Q
    |||    
T  9416687 caa 9416689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 9377058 - 9377149
Alignment:
Q  1 aagatgacacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaa 92  Q
    |||||||||||||||||||||  |  | ||| |||| |||||||||||| ||||||||||||| ||||||  |||||||  |||||||||||    
T  9377058 aagatgacacaatttcctttgggaagacacagatcccaagcagaagcaggaaacgaacatccactccccacaaacaaaatcctatcccctaa 9377149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 9347995 - 9348088
Alignment:
Q  37 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 130  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |  |||||| ||||| |||||||||||||||||||    
T  9347995 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcctcaacttcacccacttcttctccttctcatcaa 9348088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 9369649 - 9369742
Alignment:
Q  37 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 130  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |  |||||| ||||| |||||||||||||||||||    
T  9369649 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcctcaacttcacccacttcttctccttctcatcaa 9369742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 9756381 - 9756502
Alignment:
Q  30 caaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatca 129  Q
    ||||||||| ||||| ||||| || ||||| || | ||| || |||||||| |||||||| ||| || |||||||||||||  | ||||| |||||||||    
T  9756381 caaatccgatgcagatgcagagaatgaacagccttccccgaaaaacaaaaccctatcccccaaattcaccaacttgacccaccttttctctttctcatca 9756480  T
Q  130 agtctgaacacatcaagcttta 151  Q
    || ||  ||||||||| |||||    
T  9756481 agcctatacacatcaatcttta 9756502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 9432896 - 9433012
Alignment:
Q  29 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 128  Q
    |||||||||| || ||||||||||| ||| || ||  ||| | ||||||||| ||||| |||||| ||   | ||| ||||| ||| |||||||||||||    
T  9432896 acaaatccgaggctgaagcagaaaaggaatattcaagccctatgaacaaaaccctatctcctaaattcttgatcttcacccacttcctctccttctcatc 9432995  T
Q  129 aagtctgaacacatcaa 145  Q
    ||||||||| |||||||    
T  9432996 aagtctgaaaacatcaa 9433012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 9441915 - 9441815
Alignment:
Q  11 aatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccca 110  Q
    |||| ||||||||| || ||| |||| | || ||||||||||| ||||||  |||| | ||||||||||| |||||||||||||||  |||||| |||||    
T  9441915 aattccctttgacaacacacatatccaaggctgaagcagaaaatgaacatttattcacaaagaacaaaaccctatcccctaaactcatcaacttcaccca 9441816  T
Q  111 t 111  Q
    |    
T  9441815 t 9441815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 9614097 - 9614009
Alignment:
Q  1 aagatgacacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 89  Q
    ||||| |||||||||||||||  |  | ||| ||| ||||||||||||||||| ||||||||| |||||||||| |||||  |||||||    
T  9614097 aagataacacaatttcctttggtaagacacagatctgaagcagaagcagaaaatgaacatccactccccaagaaaaaaaccatatcccc 9614009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 9626596 - 9626488
Alignment:
Q  29 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 128  Q
    ||||||||||||| || |||||||| ||   ||| || || || |||||||| |||||||||||| ||  ||| || ||||||||||||||||||||||     
T  9626596 acaaatccgaagctgatgcagaaaatgatgttcctttgccaaaaaacaaaaccctatcccctaaattcatcaaattcacccatttcttctccttctcatg 9626497  T
Q  129 aagtctgaa 137  Q
    || ||||||    
T  9626496 aaatctgaa 9626488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 9686751 - 9686799
Alignment:
Q  97 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 145  Q
    |||||||||||||| |||||||| ||||||||||| ||||| |||||||    
T  9686751 gccaacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 16011797 - 16011768
Alignment:
Q  30 caaatccgaagcagaagcagaaaacgaaca 59  Q
    ||||||||||||||||||||||||||||||    
T  16011797 caaatccgaagcagaagcagaaaacgaaca 16011768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 44688929 - 44688680
Alignment:
Q  1 aagatgacacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcca 100  Q
    ||||| |||||||| |||||| ||  ||||||||||||||||| || |||||| ||| || |||||||||||||||||| ||||| |||||||||||  |    
T  44688929 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgtta 44688830  T
Q  101 acttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctac 200  Q
    |||| ||||||||||| | ||||||||  ||  ||||||||||||||  || |||||||||||| ||||| ||||||| |||||||||||| ||||| ||    
T  44688829 actttacccatttcttatgcttctcattgagcgtgaacacatcaagccgtagaccatcttcacccgggaacccaaaaccatgagagtcatagatgtccac 44688730  T
Q  201 tagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 250  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  44688729 tagcaacaactcaccttcactctctaccaggaattttatgtcccctccat 44688680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 85 - 250
Target Start/End: Complemental strand, 13170744 - 13170579
Alignment:
Q  85 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgag 184  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||    
T  13170744 tcccctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaagctttaaaccatattcaccagggaaaccgtaacgatgag 13170645  T
Q  185 agtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 250  Q
     |||||| ||||| |||||||||||||||| ||| ||||| |||| ||||||||||||||||||||    
T  13170644 ggtcatagatgtccactagcaacaactcaccctcgctctcgaccaagaatttcatgtcccctccat 13170579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 18991176 - 18991422
Alignment:
Q  1 aagatgacacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcca 100  Q
    |||| ||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||  |     
T  18991176 aagacgacacaattccctttgacaacagataaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctattccctaagctcttcg 18991275  T
Q  101 acttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctac 200  Q
    || |   ||||| |||||   |||||| ||| || ||||| |  || |||| ||| | ||| |||||||| ||||||||||| |||||| | ||||| ||    
T  18991276 acct---ccattccttctttctctcattaagcctaaacaccttcagttttagacctttttcgccagggaacccaaaacaatgcgagtcacagatgtccac 18991372  T
Q  201 tagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 250  Q
    ||||||||||||||  |||| |||||||| ||||||||| ||||||||||    
T  18991373 tagcaacaactcaccttcacactctaccaagaatttcatatcccctccat 18991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 4428603 - 4428742
Alignment:
Q  1 aagatgacacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcca 100  Q
    |||||||||||||| |||||   | ||||||| || |||||||| ||||||||| |||||||||||||||| |||||||| |||||||| ||||||| ||    
T  4428603 aagatgacacaattccctttagtaacagacaactcagaagcagaggcagaaaacaaacatccattccccaaaaacaaaaccctatcccccaaactcgtca 4428702  T
Q  101 acttgacccatttcttctccttctcatcaagtctgaacac 140  Q
    | || ||||||||   | ||||||||||||| || |||||    
T  4428703 atttcacccatttacgcgccttctcatcaagcctaaacac 4428742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 4439832 - 4439927
Alignment:
Q  1 aagatgacacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 96  Q
    |||||||||||||| |||||   | || ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||    
T  4439832 aagatgacacaattccctttagaaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatctcccaaactc 4439927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 235213 - 235311
Alignment:
Q  29 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 127  Q
    ||||||||||||||||||||||||||||||||     ||||||||| |||||||||||||||||| | |||||||| ||||| ||||||||||| ||||    
T  235213 acaaatccgaagcagaagcagaaaacgaacatagcaaccccaagaagaaaactctatcccctaaatttgccaacttcacccacttcttctccttttcat 235311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 8814500 - 8814385
Alignment:
Q  7 acacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttga 106  Q
    |||||||| ||||||  | || |||||||| |||||||||||||||| |||||      |||||| ||||||||||||||||||||| |||||||||| |    
T  8814500 acacaattccctttgggaacacacaaatccaaagcagaagcagaaaatgaacacaaggaccccaaaaacaaaactctatcccctaaattcgccaacttca 8814401  T
Q  107 cccatttcttctcctt 122  Q
    |||| |||||||||||    
T  8814400 cccacttcttctcctt 8814385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 251510 - 251412
Alignment:
Q  29 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 127  Q
    |||||||||| |||||| ||||||| ||||||     |||||||||||||||||||||||||| | |||||||||| ||||| ||||| ||||| ||||    
T  251510 acaaatccgatgcagaaacagaaaatgaacatagccaccccaagaacaaaactctatcccctatattcgccaactttacccacttcttttccttttcat 251412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 246841 - 246958
Alignment:
Q  3 gatgacacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaac 102  Q
    |||||||||||| ||||||  | || |||||||| |||||||||||||||| || ||      |||||||||||||||| |||| |||||| | ||||||    
T  246841 gatgacacaattccctttgtgaacacacaaatccaaagcagaagcagaaaatgaccagaacaaccccaagaacaaaactgtatctcctaaattagccaac 246940  T
Q  103 ttgacccatttcttctcc 120  Q
    || |||||||||||||||    
T  246941 ttcacccatttcttctcc 246958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 231589 - 231674
Alignment:
Q  37 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 122  Q
    ||||||||||||||||| ||||||     |||||||||||||||| ||||||||||| | |||||||| ||||| ||| |||||||    
T  231589 gaagcagaagcagaaaatgaacatagggaccccaagaacaaaactatatcccctaaattagccaacttcacccacttcatctcctt 231674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 20694445 - 20694304
Alignment:
Q  1 aagatgacacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcca 100  Q
    |||||||||||||| |||||| || || ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| | ||    
T  20694445 aagatgacacaattccctttggcaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatcccccaaacttgtca 20694346  T
Q  101 acttgacccatttcttctccttctcatcaagtctgaacacat 142  Q
    |  | ||||||||||||||||| |||||||| ||||||||||    
T  20694345 aactcacccatttcttctccttttcatcaagcctgaacacat 20694304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 7041468 - 7041612
Alignment:
Q  1 aagatgacacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcca 100  Q
    |||||||||||||| |||||| || |  ||||||||||||||||| |||| ||||||||| | |  |||||||||||||| |||||||||||||| | ||    
T  7041468 aagatgacacaattccctttggcaacgcacaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaactagtca 7041567  T
Q  101 acttgacccatttcttctccttctcatcaagtctgaacacatcaa 145  Q
    |||| ||||| |||||||||||||||| |||| | |||| |||||    
T  7041568 acttcacccacttcttctccttctcattaagtttaaacaaatcaa 7041612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 7046817 - 7046937
Alignment:
Q  7 acacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttga 106  Q
    |||||||| |||||| || || ||||||| |||  |||||||||||||||||||    ||||||||||||||||| |||||||||||||||  ||||| |    
T  7046817 acacaattccctttggcaacatacaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccctaaactcgttaacttca 7046916  T
Q  107 cccatttcttctccttctcat 127  Q
    |||| ||||||||||||||||    
T  7046917 cccacttcttctccttctcat 7046937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 7025722 - 7025854
Alignment:
Q  1 aagatgacacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaaac 94  Q
    ||||||||| |||| |||||| || || ||||||| |||||| |||||||||||||||||      ||   ||||||||||||||| ||||| |||||||    
T  7025722 aagatgacagaattccctttggcaacacacaaatctgaagcacaagcagaaaacgaacataccaaccccaaccccaagaacaaaaccctatctcctaaac 7025821  T
Q  95 tcgccaacttgacccatttcttctccttctcat 127  Q
    ||| |||||| ||||| ||||||||||||||||    
T  7025822 tcgtcaacttcacccacttcttctccttctcat 7025854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 7012786 - 7012918
Alignment:
Q  1 aagatgacacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaaac 94  Q
    ||||||||| |||| |||||| || || |||||||||||||| | |||||||||||||||      ||   ||||||||||||||  ||||| |||||||    
T  7012786 aagatgacagaattccctttggcaacacacaaatccgaagcacaggcagaaaacgaacataccaaccccaaccccaagaacaaaatcctatctcctaaac 7012885  T
Q  95 tcgccaacttgacccatttcttctccttctcat 127  Q
    | | |||||| ||||| ||||||||||||||||    
T  7012886 ttgtcaacttcacccacttcttctccttctcat 7012918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 7029850 - 7029911
Alignment:
Q  66 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 127  Q
    ||||||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||    
T  7029850 ccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcat 7029911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 9170854 - 9170915
Alignment:
Q  66 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 127  Q
    ||||||||||||||| ||||||||||||||||  || || ||||| ||||||||||||||||    
T  9170854 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcat 9170915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 9159574 - 9159515
Alignment:
Q  66 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 125  Q
    ||||||||||||||| ||||||||||||||||  || || ||||| ||||||||||||||    
T  9159574 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctc 9159515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 3695662 - 3695792
Alignment:
Q  1 aagatgacacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcca 100  Q
    ||||| |||||||| |||||| || |||||||||||||||||  ||||||||| ||||||    | || |||||||||||||||||||||||||||  ||    
T  3695662 aagatcacacaattccctttggcagcagacaaatccgaagcaatagcagaaaatgaacatatgataccgaagaacaaaactctatcccctaaactctaca 3695761  T
Q  101 acttgacccatttcttctccttctcatcaagt 132  Q
    ||||||  || ||||||| |||||||| ||||    
T  3695762 acttga-tcacttcttcttcttctcattaagt 3695792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 450219 - 450111
Alignment:
Q  37 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 136  Q
    ||||||||||||||||| ||| |   ||  || |||||||||| | |||| |||||| ||  |||||||||||| || ||||||||||||||||| || |    
T  450219 gaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaa 450120  T
Q  137 acacatcaa 145  Q
    |||||||||    
T  450119 acacatcaa 450111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 18571086 - 18571213
Alignment:
Q  7 acacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaa---aactctatcccctaaactcgccaact 103  Q
    |||||||| ||||||  | || |||||||||||||||||  |||||| |||| | |  | || ||||||||   |||| ||||||||||||||| ||| |    
T  18571086 acacaattccctttggaaacacacaaatccgaagcagaaatagaaaaagaacctgccatgcctaagaacaaaacaactgtatcccctaaactcgtcaatt 18571185  T
Q  104 tgacccatttcttctccttctcatcaag 131  Q
    | ||||| ||||||||||||||||||||    
T  18571186 tcacccacttcttctccttctcatcaag 18571213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 33541624 - 33541750
Alignment:
Q  1 aagatgacacaatttcctttgacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcca 100  Q
    |||| ||||||||| |||||| || | |||||||| |||||||| |||||||| |||||  ||  ||| |||||||||||  |||| |||||||||   |    
T  33541624 aagaggacacaattacctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttta 33541723  T
Q  101 acttgacccatttcttctccttctcat 127  Q
    |||| ||||| | | ||||||||||||    
T  33541724 acttcacccactccgtctccttctcat 33541750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University