View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_22 (Length: 455)
Name: NF8260A_low_22
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 7 - 384
Target Start/End: Original strand, 20426667 - 20427044
Alignment:
| Q |
7 |
ggaccaaactctttgttgttggaccattgctctacattgagcgtcttattggagtggggaagaacggtgatattttcctaaaacaaaaagatggtcagct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||| |
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| T |
20426667 |
ggaccaaactctttgttgttggaccattgctctacattgagcgtcttattggagtggggatgaacggtgatattttcctaatataaaaagatggtcagct |
20426766 |
T |
|
| Q |
107 |
agtctgttttgatttacatacccaggagactgaaaaacttgggtgttatgggaggcgttttaatattgcaatttacaagaaaagccttgtttcgattgga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20426767 |
agtctgttttgatttacatacccaggagactgaaaaacttgggtgttatgggaggcgtttttatattgcaatttacaagaaaagccttgtttcgattgga |
20426866 |
T |
|
| Q |
207 |
ggaataaatcagtaattggtttttcatgtttctaccttcgaaatttatgattgtgtttagtaggattttacatttgtttatcaccctgatcataaatatt |
306 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20426867 |
ggaataaatcagtaattggtttttcatgtttttaccttcgaaatttatgatcgtgtttagtaggattttacatttgtttatcaccctgatcataaatatt |
20426966 |
T |
|
| Q |
307 |
atcaatgacatgaaaaataaagaatgtatttgataatgatgaataatgctgtattattatcaattttactgtagtatt |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20426967 |
atcaatgacatgaaaaataaagaatgtatttgataatgatgaataatgctgtattattatcaattttatagtagtatt |
20427044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 7 - 265
Target Start/End: Complemental strand, 15338170 - 15337909
Alignment:
| Q |
7 |
ggaccaaactctttgttgttggaccattgctctacattgagcgtcttattggagtggggaagaacggtgatattttcctaaaacaaaaagatggtcagct |
106 |
Q |
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|||| ||||| ||||||||||||||| | | |||||||| ||||||||||||| ||| ||||| |||||||| ||| | || ||||||||||| |||| |
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| T |
15338170 |
ggactaaactatttgttgttggaccacttccttacattgatcgtcttattggagcgggaaagaatggtgatatattcttccaaaaaaaagatggtaagct |
15338071 |
T |
|
| Q |
107 |
agtctgttttgatttacatacccaggagactgaaaaacttgggtgttatgggag-gcgttttaata---ttgcaatttacaagaaaagccttgtttcgat |
202 |
Q |
| |
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||||||||| |||| ||| ||| |||||||| ||||||| ||||| |||| || |||| || ||||||||||||||||||| || | || || |
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| T |
15338070 |
agtctgtttcagtttaagtactcagaagactgaagaacttgg-tgttaaaggagcgcatttttatgatcttgcaatttacaagaaaagttttctctcaat |
15337972 |
T |
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| Q |
203 |
tggaggaataaatcagtaattggtttttcatgtttctaccttcgaaatttatgattgtgttta |
265 |
Q |
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||| ||||||||||| ||||||||||||||||||| |||| || ||||||||||||||||| |
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| T |
15337971 |
tggtggaataaatcattaattggtttttcatgtttaccccttagagatttatgattgtgttta |
15337909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 7 - 265
Target Start/End: Complemental strand, 15427235 - 15426974
Alignment:
| Q |
7 |
ggaccaaactctttgttgttggaccattgctctacattgagcgtcttattggagtggggaagaacggtgatattttcctaaaacaaaaagatggtcagct |
106 |
Q |
| |
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|||| ||||| ||||||||||||||| | | |||||||| ||||||||||||| ||| ||||| |||||||| ||| | || ||||||||||| |||| |
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| T |
15427235 |
ggactaaactatttgttgttggaccacttccttacattgatcgtcttattggagcgggaaagaatggtgatatattcttccaaaaaaaagatggtaagct |
15427136 |
T |
|
| Q |
107 |
agtctgttttgatttacatacccaggagactgaaaaacttgggtgttatgggag-gcgttttaata---ttgcaatttacaagaaaagccttgtttcgat |
202 |
Q |
| |
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||||||||| |||| ||| ||| |||||||| ||||||| ||||| |||| || |||| || ||||||||||||||||||| || | || || |
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| T |
15427135 |
agtctgtttcagtttaagtactcagaagactgaagaacttgg-tgttaaaggagcgcatttttatgatcttgcaatttacaagaaaagttttctctcaat |
15427037 |
T |
|
| Q |
203 |
tggaggaataaatcagtaattggtttttcatgtttctaccttcgaaatttatgattgtgttta |
265 |
Q |
| |
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||| ||||||||||| ||||||||||||||||||| |||| || ||||||||||||||||| |
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| T |
15427036 |
tggtggaataaatcattaattggtttttcatgtttaccccttagagatttatgattgtgttta |
15426974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 7 - 265
Target Start/End: Complemental strand, 15518539 - 15518278
Alignment:
| Q |
7 |
ggaccaaactctttgttgttggaccattgctctacattgagcgtcttattggagtggggaagaacggtgatattttcctaaaacaaaaagatggtcagct |
106 |
Q |
| |
|
|||| ||||| ||||||||||||||| | | |||||||| ||||||||||||| ||| ||||| |||||||| ||| | || ||||||||||| |||| |
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| T |
15518539 |
ggactaaactatttgttgttggaccacttccttacattgatcgtcttattggagcgggaaagaatggtgatatattcttccaaaaaaaagatggtaagct |
15518440 |
T |
|
| Q |
107 |
agtctgttttgatttacatacccaggagactgaaaaacttgggtgttatgggag-gcgttttaata---ttgcaatttacaagaaaagccttgtttcgat |
202 |
Q |
| |
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||||||||| |||| ||| ||| |||||||| ||||||| ||||| |||| || |||| || ||||||||||||||||||| || | || || |
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| T |
15518439 |
agtctgtttcagtttaagtactcagaagactgaagaacttgg-tgttaaaggagcgcatttttatgatcttgcaatttacaagaaaagttttctctcaat |
15518341 |
T |
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| Q |
203 |
tggaggaataaatcagtaattggtttttcatgtttctaccttcgaaatttatgattgtgttta |
265 |
Q |
| |
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||| ||||||||||| ||||||||||||||||||| |||| || ||||||||||||||||| |
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| T |
15518340 |
tggtggaataaatcattaattggtttttcatgtttaccccttagagatttatgattgtgttta |
15518278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 283
Target Start/End: Complemental strand, 44912379 - 44912263
Alignment:
| Q |
167 |
taatattgcaatttacaagaaaagccttgtttcgattggaggaataaatcagtaattggtttttcatgtttctaccttcgaaat-ttatgattgtgttta |
265 |
Q |
| |
|
|||||||||||||||||||||| | ||| | ||| |||| ||||||||| ||||||||| ||||| ||||| ||||| ||||| ||| ||||||||||| |
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| T |
44912379 |
taatattgcaatttacaagaaaggtcttctctcgcttggcggaataaataagtaattggattttcgtgtttgcacctt-gaaatattaggattgtgttta |
44912281 |
T |
|
| Q |
266 |
gtaggattttacatttgt |
283 |
Q |
| |
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||| ||||||| ||||| |
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| T |
44912280 |
ttagaattttacttttgt |
44912263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 44937818 - 44937765
Alignment:
| Q |
7 |
ggaccaaactctttgttgttggaccattgctctacattgagcgtcttattggag |
60 |
Q |
| |
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|||| ||||||||||||||||||||| | | |||||| |||||||||||||||| |
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|
| T |
44937818 |
ggactaaactctttgttgttggaccactaccctacatggagcgtcttattggag |
44937765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 44918342 - 44918282
Alignment:
| Q |
169 |
atattgcaatttacaagaaaagccttgtttcgattggaggaataaatcagtaattggtttt |
229 |
Q |
| |
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|||||||||||||||||||||| ||| | ||| |||| ||||||||| ||||||| ||||| |
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| T |
44918342 |
atattgcaatttacaagaaaagtcttctctcggttggtggaataaataagtaattcgtttt |
44918282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 51870058 - 51870192
Alignment:
| Q |
12 |
aaactctttgttgttggaccattgctctacattgagcgtcttattggagtggggaagaacggtgatattttcctaaaacaaaaagatggtcagctagtct |
111 |
Q |
| |
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||||||||| ||||||| |||| ||||||||| ||||||||||||| || |||||| ||||||| || | || ||| ||||||||| ||||| | |
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| T |
51870058 |
aaactctttattgttgggtcattttcctacattgatcgtcttattggagcaggaaagaactgtgatatattgttccaaaaaatagatggtcaactagtgt |
51870157 |
T |
|
| Q |
112 |
gttttgatttacatacccaggagactgaaaaactt |
146 |
Q |
| |
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|||||||||| |||||| |||||||| ||||| |
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| T |
51870158 |
attttgatttaagtacccaaaagactgaagaactt |
51870192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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