View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_222 (Length: 268)
Name: NF8260A_low_222
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_222 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 38124647 - 38124808
Alignment:
| Q |
29 |
ctatggaatttaaataaattgctattggttcgtgatacgctgtttagaacaaagtgatgtcaaatagtagctatgaaactctgtagcttaatagagtttg |
128 |
Q |
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| T |
38124647 |
ctatggaatttaaataaattgctattggttcgtgatacgctgtttagaacaaagtgatgtcaaatagtagctatgaaactctgtaacttaatagagtttg |
38124746 |
T |
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| Q |
129 |
aacaaactgctatattccacgatctacagttgaaaacacttttttctacttacacagctgaa |
190 |
Q |
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| T |
38124747 |
aacaaactgctatattccacgatctacacttgaaaacacttttttctacttacacagctgaa |
38124808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 253
Target Start/End: Original strand, 38124840 - 38124869
Alignment:
| Q |
224 |
ctcaatggaaaggagtataagaccatggat |
253 |
Q |
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| T |
38124840 |
ctcaatggaaaggagtataagaccatggat |
38124869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 13510345 - 13510301
Alignment:
| Q |
50 |
ctattggttcgtgatacgctgtttagaacaaagtgatgtcaaata |
94 |
Q |
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| T |
13510345 |
ctattgtttcgtgaaacgctatttagtacaaagtgatgtcaaata |
13510301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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