View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_223 (Length: 267)
Name: NF8260A_low_223
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_223 |
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| [»] scaffold0340 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 97 - 252
Target Start/End: Complemental strand, 2455019 - 2454864
Alignment:
| Q |
97 |
ggtatggcaaaattgcacttatgcgccaaaccatgcactcagggcatgctgggggcggatcaaaattgcttttttccacattttaagtggaaaaccccag |
196 |
Q |
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| T |
2455019 |
ggtatggcaaaattgcacttatgcgccaaaccatgcactcggggcatgctgggggcggatcaaaattgcttttttccacattttaagtggaaaagcccag |
2454920 |
T |
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| Q |
197 |
ttttcaaatcaaacccaattgaaaacttgcctataaataacaaacatctcactcat |
252 |
Q |
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| T |
2454919 |
ttttcaaatcaaacccaattgaaaacttgcctataaataacaaacatctcactcat |
2454864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 2455221 - 2455127
Alignment:
| Q |
1 |
acattttaaatatttgtgaagaccatgggaagaccatatgaatgaagattcaagatgcctcgaaagacattacgaagaaatgaattatgttctca |
95 |
Q |
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| T |
2455221 |
acattctaaatatttgtgaagatcatgggaagaccatatgaatgaagattcaagatgcctcgaaagatattaccaagaaatgaattatgttctca |
2455127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 25530961 - 25531037
Alignment:
| Q |
14 |
ttgtgaagaccatgggaagaccatatgaatgaagattcaagatgcctcgaaagacattacgaagaaatgaattatgttc |
92 |
Q |
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| T |
25530961 |
ttgtgaagatcttgggaagatcat--gaatgaagattcaagaggccttgtaagacattacaaagagaggaattatgttc |
25531037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 10822079 - 10822025
Alignment:
| Q |
38 |
atgaatgaagattcaagatgcctcgaaagacattacgaagaaatgaattatgttc |
92 |
Q |
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| T |
10822079 |
atgaatgaagattcaaaaggcctcaaaagacattacaaaggaaggaattatgttc |
10822025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 12747713 - 12747681
Alignment:
| Q |
203 |
aatcaaacccaattgaaaacttgcctataaata |
235 |
Q |
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| T |
12747713 |
aatccaacccaattgaaaacttgcctataaata |
12747681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 16786 - 16746
Alignment:
| Q |
38 |
atgaatgaagattcaagatgcctcgaaagacattacgaaga |
78 |
Q |
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| T |
16786 |
atgaatgaagattcaagaagcctctaaagacattacaaaga |
16746 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 17661813 - 17661756
Alignment:
| Q |
14 |
ttgtgaagaccatgggaagaccatatgaatgaagattcaagatgcctcgaaagacattac |
73 |
Q |
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| T |
17661813 |
ttgtgaagatcatgggaagac--tatgaatgacgattcaagaggcctcataagacattac |
17661756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 8445731 - 8445763
Alignment:
| Q |
41 |
aatgaagattcaagatgcctcgaaagacattac |
73 |
Q |
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| T |
8445731 |
aatgaagattcaagatgcctctaaagacattac |
8445763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 27911928 - 27911871
Alignment:
| Q |
14 |
ttgtgaagaccatgggaagaccatatgaatgaagattcaagatgcctcgaaagacattac |
73 |
Q |
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| T |
27911928 |
ttgtgaagatcttgggaagaccat--gaatgaagattcaagaggcctcagaagacattac |
27911871 |
T |
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