View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8260A_low_227 (Length: 266)
Name: NF8260A_low_227
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_227 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 30315986 - 30315727
Alignment:
| Q |
1 |
attcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcactatgagctatagttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30315986 |
attcttgattaatttattcatagtacaaaaggtggaactctagttacaattacaagataatgccgttttattctttgctcactatgagctatagttcctt |
30315887 |
T |
|
| Q |
101 |
acagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcgaccttctttcctttccct |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
30315886 |
acagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcgaccttcttccctttccct |
30315787 |
T |
|
| Q |
201 |
ttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30315786 |
ttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaac |
30315727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 30287445 - 30287193
Alignment:
| Q |
1 |
attcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcactatgagctatagttcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||| || ||||||||||||| |||||||||| ||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
30287445 |
attcttgattaatttattcatagtagaaa-ggaggaactctagtta------caagataatgccgttttattcttttctcattatgagctatagttcctt |
30287353 |
T |
|
| Q |
101 |
acagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcgaccttctttcctttccct |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
30287352 |
acagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcgaccttcttccctttccct |
30287253 |
T |
|
| Q |
201 |
ttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30287252 |
ttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaac |
30287193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 30305119 - 30304861
Alignment:
| Q |
1 |
attcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcactatgagctatagttcctt |
100 |
Q |
| |
|
|||||||||| | |||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| | ||||| ||| |||||||| ||| | |
|
|
| T |
30305119 |
attcttgattcagttattcatagtagaaa-ggtggaactctagttatagttacaagataatgccgttttattcatcgctcattattagctatagctccat |
30305021 |
T |
|
| Q |
101 |
acagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcgaccttctttcctttccct |
200 |
Q |
| |
|
| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
30305020 |
atatcatacttgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcgaccttcttccctttccct |
30304921 |
T |
|
| Q |
201 |
ttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30304920 |
ttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaac |
30304861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 30300321 - 30300069
Alignment:
| Q |
1 |
attcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcactatgagctatagttcctt |
100 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||||||||||| || ||||||| || ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
30300321 |
attcttgattaatttattcatggtggaaa-ggtggaactctagata------caagatattgccgttttattctctgctcactatgagctatgactcctt |
30300229 |
T |
|
| Q |
101 |
acagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcgaccttctttcctttccct |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
30300228 |
acagcatacaagcataatatttgatcactcattaaaatactcccaaaattgaagatataagctccctttgtctctggcttcgaccttcttccctttccct |
30300129 |
T |
|
| Q |
201 |
ttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30300128 |
ttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaac |
30300069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 2 - 260
Target Start/End: Complemental strand, 30292467 - 30292227
Alignment:
| Q |
2 |
ttcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcactatgagctatagttcctta |
101 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||| || |
|
|
| T |
30292467 |
ttcttgattaatttattcatagtaggaaag-tggaactctagttatagttacaagctaatgccgttttattcattgctcactatgagct---------ta |
30292378 |
T |
|
| Q |
102 |
cagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcgaccttctttcctttccctt |
201 |
Q |
| |
|
|||||||| |||||||| |||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30292377 |
gagcatacaagcataataag--------cattaaaacgttcccgaaattgaagaaataggctccctttttctctggcttcgaccttcttccctttccctt |
30292286 |
T |
|
| Q |
202 |
tgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30292285 |
tgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaac |
30292227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 46810582 - 46810518
Alignment:
| Q |
196 |
tccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
260 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || ||||||| |||||| ||||| |
|
|
| T |
46810582 |
tccctttgttgaggttgagcatttgcaaagtaagattgtctttggttctttattagcctatcaac |
46810518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University