View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_234 (Length: 263)
Name: NF8260A_low_234
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_234 |
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Alignment Details
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 30310446 - 30310395
Alignment:
| Q |
55 |
ttatcatgtcatatatattgtaacaagtgttacatcaaaaggttagcgtcgc |
106 |
Q |
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| T |
30310446 |
ttatcatatcatatttattgtaacaagcgttacatcaaaaggttagcgtcgc |
30310395 |
T |
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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 30309876 - 30309791
Alignment:
| Q |
169 |
gaaggtctccttttttatcccaaaatttgatttgatttgannnnnnnnngttgaagaaaatccctaattcttctcagtcccgtccagtt |
257 |
Q |
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| T |
30309876 |
gaaggtctccttttttatcccaaaattt-atttgattt--attttttttgttgaagaaaatccctaattcttctcagtccggtccagtt |
30309791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 30310531 - 30310498
Alignment:
| Q |
11 |
gatgaagaagataatttatttaatttttgtaatt |
44 |
Q |
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| T |
30310531 |
gatgaagaagataatttatttaatttttgtaatt |
30310498 |
T |
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